https://github.com/thackl/sam-scripts
- bam-coverage
- bam-junctions
https://github.com/thackl/seq-scripts
- seq-circ-restart
- seq-circ-trim
- seq-comp
https://github.com/thackl/phylo-scripts
- tax-resolve
genome-size-estimation/genome-size-estimation.R
Assemblies have been processed with redundans, but still contain bacterial contaminations and potential misassemblies, and are unpolished.
file | assembler | primary_data | num_seqs | sum_len | min_len | max_len | N50 |
---|---|---|---|---|---|---|---|
CrBV-c0b.fa | Canu 1.8 | pacbio | 343 | 39107625 | 5118 | 1533637 | 429009 |
CrBV-c1b.fa | Canu 1.8 | pacbio | 394 | 40117058 | 5308 | 975077 | 270687 |
CrBV-f1b.fa | Flye 2.3.7 | pacbio | 213 | 37884398 | 5129 | 1475468 | 479063 |
CrBV-w5b.fa | Wtdbg 2.1 | pacbio | 268 | 38356196 | 5098 | 1458748 | 435830 |
CrCf-c0b.fa | Canu 1.8 | pacbio | 272 | 34561700 | 5589 | 1022239 | 229877 |
CrCf-c1b.fa | Canu 1.8 | pacbio | 311 | 36551481 | 5490 | 1011470 | 270089 |
CrCf-f1b.fa | Flye 2.3.7 | pacbio | 216 | 34137805 | 5245 | 946461 | 276367 |
CrCf-w5b.fa | Wtdbg 2.1 | pacbio | 187 | 33253511 | 5670 | 938012 | 321504 |
CrEa-c0b.fa | Canu 1.8 | pacbio | 265 | 35731872 | 5057 | 1514847 | 402275 |
CrEa-c1b.fa | Canu 1.8 | pacbio | 293 | 36283366 | 5128 | 1087465 | 282182 |
CrEa-f1b.fa | Flye 2.3.7 | pacbio | 190 | 34509388 | 5337 | 1335512 | 348875 |
CrEa-gen-dp-4.5.fa | SPAdes 3.6.1 | miseq + corr. pacbio | 315 | 29710364 | 1002 | 910477 | 228292 |
CrEa-w5b.fa | Wtdbg 2.1 | pacbio | 376 | 36791972 | 5002 | 1475054 | 432668 |
CrEa-w6b.fa | Wtdbg 2.1 | pacbio | 371 | 36429848 | 5057 | 947144 | 405606 |
CrEa-w7b.fa | Wtdbg 2.1 | pacbio | 333 | 36790428 | 5080 | 1467234 | 546423 |
CrEa-w8b.fa | Wtdbg 2.1 | pacbio | 385 | 36725772 | 5002 | 1259187 | 383112 |
CrRC-c0b.fa | Canu 1.8 | pacbio | 513 | 30455408 | 5151 | 563941 | 99385 |
CrRC-c1b.fa | Canu 1.8 | pacbio | 392 | 34047446 | 6587 | 635481 | 155376 |
CrRC-f1b.fa | Flye 2.3.7 | pacbio | 396 | 33792790 | 5193 | 720955 | 131225 |
CrRC-w5b.fa | Wtdbg 2.1 | pacbio | 296 | 31845612 | 5053 | 701287 | 178453 |