Pinned Repositories
AliTV
Visualize whole genome alignments as linear maps
proovread
PacBio hybrid error correction through iterative short read consensus
cross-species-scaffolding
Super-scaffolding of draft genome assemblies with in silico mate-pair libraries derived from (closely) related references
detectEVE
Find endogenous viral elements in genomes
gggenomes
A grammar of graphics for comparative genomics
ggworldmap
Visualize Global-Scale Quantitative Data on World Maps with Projection and Shifted Central Meridian
minidot
Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
proovframe
frame-shift correction for long-read (meta)genomics
seq-scripts
scripts for sequence and feature conversion, annotation, analysis ...
treemmer-animate
thackl's Repositories
thackl/gggenomes
A grammar of graphics for comparative genomics
thackl/proovframe
frame-shift correction for long-read (meta)genomics
thackl/seq-scripts
scripts for sequence and feature conversion, annotation, analysis ...
thackl/detectEVE
Find endogenous viral elements in genomes
thackl/cross-species-scaffolding
Super-scaffolding of draft genome assemblies with in silico mate-pair libraries derived from (closely) related references
thackl/host-phage-tRNA-att-finder
Link phages and potential host by finding shared attachment sites for prophage integration
thackl/pro-tycheposons
Supplementary code and data for mobile genetic elements in Prochlorococcus
thackl/thacklr
A Collection of R Functions and Snippets I Often Use
thackl/thackl.github.io
Source code of my homepage & blog
thackl/AliView
Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
thackl/google-sync
Scripts for syncing local tsv files with google spreadsheets
thackl/lecture-variant-calling
Variant-Calling-Example
thackl/plot-scripts
Quick plots directly in the terminal window
thackl/proovframe-benchmark
Benchmark data sets used to assess proovframe - frame-shift correction for long-read (meta)genomics
thackl/simons-metagenome-data-descriptor-map-figure
thackl/cb-emales
Supplementary code and data for endogenous mavirus-like elements in Cafeteria burkhardae genomes
thackl/circlator
A tool to circularize genome assemblies
thackl/cr-genomes
Supplementary code and data for genomes of C.roenbergensis: E4-10P, BVI, Cflag and RCC970-E3
thackl/gallery
Gallery of ggplot2 extensions
thackl/hmm-scripts
thackl/mbc
long-read-metabarcoding for eukaryotes
thackl/mbc-prime
Find group-specific primer binding sites for amplicon metabarcoding
thackl/omx-assemble-ont
A workflow for polished assemblies from nanopore data
thackl/omx-suite
A command line interface to omx-* snakemake workflows
thackl/org-anize
Navigate projects based on .org files and prespecified folder structures
thackl/phylo-scripts
scripts for working with phylogenic and taxonomic data
thackl/reactivated-endogenous-virophages
Supplementary data for Koslova et al. "Endogenous virophages in the marine protist Cafeteria burkhardae are active and mitigate giant virus infection"
thackl/sam-scripts
scripts for SAM/BAM analysis, conversion, modification, ...
thackl/ubuntu-setup
Things to setup and install on fresh ubuntu
thackl/zsh-setup
customized zsh configs and setup scripts