thackl/detectEVE

Issues

• Duplicated putatives for last hit in initial search

  #37 opened 3 months ago
  0

• Ensure multiple hits per reference protein are allowed

  #36 opened 4 months ago
  1

• Unique prefix for EVEs from different genomes

  #35 opened 4 months ago
  1

• Minimal example dataset

  #34 opened 4 months ago
  0

• Ensure genome (re-)download only if necessary

  #33 opened 4 months ago
  0

• Updated DAG/rulegraph figures

  #32 opened 4 months ago
  0

• Usage of config:validate

  #31 opened 4 months ago
  0

• NR as an alternative reference database

  #30 opened 4 months ago
  0

• add percentage identity of hits to final table

  #29 opened 4 months ago
  0

• top_viral_desc for custom DB/taxless DB is NA. Should be more informative

  #28 opened 4 months ago
  2

• No module named ‘asyncore’

  #26 opened 6 months ago
  0

• skip masking

  #25 opened 5 months ago
  0

• mask ubiquitin and other false positives

  #24 opened 7 months ago
  0

• keep tied top hits

  #23 opened 7 months ago
  0

• no final fasta output for hits yet

  #22 opened 7 months ago
  0

• stdout does not show final high and low confidence levels

  #21 opened 5 months ago
  0

• warning messages for custom database without Tax

  #20 opened 5 months ago
  0

• update --setup-databases for taxid in description and split databases

  #19 opened 5 months ago
  0

• setup taxonkit

  #18 opened 5 months ago
  0

• Duplicates and overlapping hits are generated due to contig chopping

  #17 opened 8 months ago
  0

• Trust the virus db - run retro search independently - compare by bitscore

  #14 opened 7 months ago
  0

• Fasta file as input only works if .fna extension

  #13 opened 8 months ago
  0

• Loss of all hits after cleaning step results in error message

  #12 opened 8 months ago
  3

• accession.csv file prevents continue of run

  #11 opened 8 months ago
  0

• Accession download not working for "replaced projects"

  #9 opened 8 months ago
  3

• accession download only working for split genomes

  #8 opened 10 months ago
  0

• Problem with R path

  #7 opened 8 months ago
  1

• Syntax error on snakemake setup

  #2 opened a year ago
  0

• Nothing provides re

  #1 opened a year ago
  0