theislab/geome

Issues

• unpin matplotlib

  #54 opened 3 months ago by giovp
  2

• Proper pyproject.toml versioning and better run instructions

  #51 opened 5 months ago by selmanozleyen
  0

• Fix the doc formatting and deploy the page

  #50 opened 5 months ago by selmanozleyen
  0

• ValueError when subgraph creation with library_key for PyG datas

  #49 opened 5 months ago by FrancescaDr
  1

• closest kNN subgraph creation

  #40 opened 5 months ago by FrancescaDr
  1

• Edge weight integration

  #39 opened 5 months ago by FrancescaDr
  2

• Missing dependencies

  #35 opened a year ago by FrancescaDr
  1

• Adding non-spatial split support

  #21 opened a year ago by selmanozleyen
  0

• LinearNCEM Train, Test, Val scheme for an experiment

  #8 opened a year ago by selmanozleyen
  0

• Determining the behavior for all cases for splitting and loading

  #22 opened a year ago by selmanozleyen
  8

• anndata2data callable builder class

  #24 opened a year ago by selmanozleyen
  4

• notebooks

  #32 opened a year ago by tothmarcella
  0

• LinearNCEM fully reproduce an experiment

  #7 opened 2 years ago by selmanozleyen
  0

• Maybe creating a builder class instead of the adata2data_fn callable?

  #14 opened 2 years ago by selmanozleyen
  1

• LinearSpatial implementation doesn't use Message Passing. Also not GPU compatible.

  #15 opened 2 years ago by selmanozleyen
  2

• Nodewise splitting of data

  #10 opened 2 years ago by tothmarcella
  1

• We should apply the mask attrs in the training loop to the loss function somehow.

  #16 opened 2 years ago by selmanozleyen
  1

• Creating a data loader for Hartmann as AnnData objects

  #11 opened 2 years ago by selmanozleyen
  1

• Overall Train, Val, Test handling

  #9 opened 2 years ago by selmanozleyen
  0

• Should there be one DataModule?

  #4 opened 2 years ago by selmanozleyen
  1

• Refactoring: Formatting in .py files and removing unused imports in .ipynp files

  #6 opened 2 years ago by selmanozleyen
  1

• Organize the repo with cookiecutter template for dependencies etc.

  #3 opened 2 years ago by selmanozleyen
  0

• Add more dataset examples and apply to linear NCEM #1

  #2 opened 2 years ago by selmanozleyen
  1