Issues
- 1
- 0
tutorials for additional datasets missing
#122 opened by ilibarra - 1
Write log of execution time, for each run.
#85 opened by ilibarra - 0
Move core notebooks to docs/notebooks
#119 opened by ilibarra - 0
- 0
inspection of counts in scATAC seq object
#120 opened by ilibarra - 0
Test that compare CPU/GPU speeds needed
#116 opened by ilibarra - 0
Sparsity module
#118 opened by ilibarra - 0
- 0
training using I/O for large datasets.
#115 opened by ilibarra - 0
Test for ChIP-seq processed data from bindome..
#114 opened by ilibarra - 0
- 6
- 0
test_aggregate raises errors
#112 opened by ilibarra - 0
addition of connectivity graph and activities as mulsum when dynamical system provided
#111 opened by ilibarra - 0
Explore GRNN for atomic representations of protein sequences (instead of LSTMs).
#110 opened by ilibarra - 0
atomic DNA/protein multi-hot encodings
#107 opened by ilibarra - 1
Addition of positional bias term
#103 opened by ilibarra - 0
Test for GenomicsDataset + optimize_iterative needed
#109 opened by ilibarra - 0
- 0
renaming/refactoring of optimize_iterative/optimize function into model.MultiBind
#105 opened by ilibarra - 1
- 0
Additional conv_di representations
#101 opened by ilibarra - 3
- 1
Triangular lower heatmap for dinucleotide features, below the mononucleotide features.
#99 opened by ilibarra - 6
Use models.multibind instead of models.selexDataset in mubind-pipeline and make tests in mubind
#95 opened by ilibarra - 0
Toy data for core unit_tests
#87 opened by ilibarra - 1
CPU/GPU awareness
#86 opened by ilibarra - 1
Include flag in SelexDataset to use sparse counts instead of non-sparse counts (default)
#97 opened by ilibarra - 0
Loss history is cut off
#83 opened by johschnee - 0
PBM case not optimizing.
#62 opened by ilibarra - 1
- 0
remove macOS from GitHub CI tests
#29 opened by ilibarra - 1
Optimize last step of forward
#61 opened by ilibarra - 1
Check _mononuc2rev and advanced indexing.
#63 opened by ilibarra - 0
scVI debugging with toy data.
#64 opened by ilibarra - 0
- 0
Replace n_kernels by n_modes
#59 opened by ilibarra - 2
No fitting when n_kernels > 3
#56 opened by ilibarra - 0
load probound models / plot kmer enrichment plot
#49 opened by ilibarra - 1
- 0
Add loss based on equation (11)
#50 opened by ilibarra - 0
- 1