thibautjombart/treescape

Issues

• little changes in phangorn

  #71 opened 8 years ago by KlausVigo
  2

• Reduce dependencies

  #70 opened 8 years ago by thibautjombart
  2

• Allow installation without requiring rgl / windowing system

  #69 opened 8 years ago by hyanwong
  7

• Export figure to SVG

  #38 opened 9 years ago by thibautjombart
  1

• restore plotGroves in shiny app

  #68 opened 9 years ago by thibautjombart
  1

• high version numbers

  #67 opened 9 years ago by thibautjombart
  4

• vignette("treescape") does not work

  #66 opened 9 years ago by thibautjombart
  3

• Package is failing Travis check

  #63 opened 9 years ago by MichelleKendall
  2

• Add median tree to shiny

  #32 opened 9 years ago by MichelleKendall
  0

• Picking lambda to give equal weight to the two vectors

  #64 opened 9 years ago by MichelleKendall
  2

• Add BEAST dataset

  #46 opened 9 years ago by thibautjombart
  3

• Make treescapeServer() able to read RDS?

  #50 opened 9 years ago by MichelleKendall
  1

• Saving 3D images

  #62 opened 9 years ago by MichelleKendall
  1

• rgl dependencies

  #59 opened 9 years ago by MichelleKendall
  5

• Please include the tree distance metrics from the Bogdanowicz TreeCmp paper

  #60 opened 9 years ago by cbud
  2

• program complains about subscript with nexus file

  #61 opened 9 years ago by cbud
  3

• benchmark large datasets

  #47 opened 9 years ago by thibautjombart
  7

• Package is failing check

  #58 opened 9 years ago by MichelleKendall
  1

• Pairwise tip distances

  #57 opened 9 years ago by MichelleKendall
  2

• Add tip weighting option to all functions

  #48 opened 9 years ago by MichelleKendall
  2

• Saving objects in Shiny "window / viewer pane"

  #56 opened 9 years ago by MichelleKendall
  0

• Save image directly from Shiny?

  #54 opened 9 years ago by MichelleKendall
  1

• Make medTree more efficient

  #55 opened 9 years ago by MichelleKendall
  1

• treescapeServer() for two trees

  #49 opened 9 years ago by MichelleKendall
  1

• Tree list with non-unique names

  #52 opened 9 years ago by MichelleKendall
  1

• Mismatched tip labels warning needed in treescape

  #51 opened 9 years ago by MichelleKendall
  1

• There is a tree structure which treeVec doesn't like

  #53 opened 9 years ago by MichelleKendall
  6

• Add findGroves test to testthat

  #45 opened 9 years ago by thibautjombart
  0

• Add unit tests using testthat

  #23 opened 9 years ago by thibautjombart
  6

• Add server to vignette

  #42 opened 9 years ago by thibautjombart
  1

• Write vignette

  #25 opened 9 years ago by thibautjombart
  7

• Implement median tree for clusters

  #41 opened 9 years ago by thibautjombart
  2

• Add details of MDS to vignette

  #43 opened 9 years ago by thibautjombart
  1

• Installation dependencies?

  #44 opened 9 years ago by MichelleKendall
  3

• Ensure camelCase consistency throughout the package

  #39 opened 9 years ago by thibautjombart
  3

• state dependencies of shiny app

  #40 opened 9 years ago by thibautjombart
  1

• Add find.groves to shiny

  #31 opened 9 years ago by thibautjombart
  4

• shiny: use larger graphics / svg

  #36 opened 9 years ago by thibautjombart
  1

• export results and trees to RData

  #37 opened 9 years ago by thibautjombart
  1

• Export clusters from shiny

  #35 opened 9 years ago by thibautjombart
  1

• Add graphics for group visualisation to shiny

  #34 opened 9 years ago by thibautjombart
  1

• Use adegraphics for scatterplots

  #30 opened 9 years ago by thibautjombart
  1

• Update to faster implementation

  #20 opened 9 years ago by MichelleKendall
  18

• Check suspected bug within med.tree

  #27 opened 9 years ago by MichelleKendall
  2

• Test Rcpp integration

  #24 opened 9 years ago by thibautjombart
  12

• Shiny app bug

  #28 opened 9 years ago by MichelleKendall
  6

• Document shiny app

  #22 opened 9 years ago by thibautjombart
  1

• Prettify shiny app

  #26 opened 9 years ago by thibautjombart
  1

• Add nexus input file.

  #21 opened 9 years ago by thibautjombart
  1

• WARNING undeclared dependencies

  #19 opened 9 years ago by thibautjombart
  3