thibautjombart
Senior Lecturer at Imperial College London. Consultant in outbreak analytics. R geek. Muay Thai enthusiast. Grindcore vocalist.
Imperial College LondonFrance
Pinned Repositories
adegenet
adegenet: a R package for the multivariate analysis of genetic markers
apex
Phylogenetic Methods for Multiple Gene Data
covid19_bed_occupancy
Shiny app providing estimates of future bed occupancy given recent admissions
covid19_cases_from_deaths
Shiny app to infer caes from new deaths of COVID-19
cv
My cv
outbreaker
Disease outbreak reconstruction from epidemiological and genetic data
OutbreakTools
Basic Tools for the Analysis of Disease Outbreaks
treescape
Exploring tree diversity
treespace
Explore spaces of phylogenetic trees
thibautjombart's Repositories
thibautjombart/adegenet
adegenet: a R package for the multivariate analysis of genetic markers
thibautjombart/treespace
Explore spaces of phylogenetic trees
thibautjombart/treescape
Exploring tree diversity
thibautjombart/covid19_bed_occupancy
Shiny app providing estimates of future bed occupancy given recent admissions
thibautjombart/OutbreakTools
Basic Tools for the Analysis of Disease Outbreaks
thibautjombart/covid19_cases_from_deaths
Shiny app to infer caes from new deaths of COVID-19
thibautjombart/apex
Phylogenetic Methods for Multiple Gene Data
thibautjombart/cv
My cv
thibautjombart/outbreaker
Disease outbreak reconstruction from epidemiological and genetic data
thibautjombart/adegenet_docker
Docker images for the R package adegenet
thibautjombart/nhs_pathways_monitoring
Real-time monitoring of potential COVID-19 cases reported through NHS pathways data
thibautjombart/palettonr
R package to import and handle palettes from paletton.com
thibautjombart/sneakr
thibautjombart/talks
thibautjombart/video-scripts
Scripts accompanying online videos
thibautjombart/bmmix
Bayesian multinomial mixture model
thibautjombart/branching_basics
Basic code for branching process simulators.
thibautjombart/contact_tracing_optim
Evaluation of contact tracing optimisation method
thibautjombart/epichange
New method to detect recent changes in incidence trends
thibautjombart/epirecipes
contributions to Simon Frost's epirecipes
thibautjombart/hugo-initio-site
Example web site for the Hugo-Initio theme
thibautjombart/learn
RECON's platform for teaching
thibautjombart/lecture-phylogenetics
LaTeX (beamer) slides of a phylogenetics lecture
thibautjombart/MERS_camel_mod
thibautjombart/misc
Collection of random, potentially useful stuff.
thibautjombart/misc_figures
misc collection of figures used in publication, training etc.
thibautjombart/quicksim
quick outbreak simulation script
thibautjombart/rweekly.org
R Weekly
thibautjombart/template_infrastructure
thibautjombart/website
My blogdown website