thibautjombart/adegenet

Issues

• bug in genlight filtering

  #363 opened 2 months ago by maxecoulter
  1

• Not reproducible results with find.clusters

  #335 opened 2 years ago by Deepak12Kaushik
  1

• find.clusters() scale default value different for data.frame

  #362 opened 3 months ago by cassondranewman
  1

• Strata problem

  #360 opened 7 months ago by laiajulianamu
  7

• Error in DAPC while selecting DAs

  #361 opened 6 months ago by massub
  1

• Geographic Distance (IBD)

  #359 opened 7 months ago by isapetitta
  2

• How to migrate genind objects to newer version of adegenet?

  #356 opened 10 months ago by romunov
  1

• Error in fstat(b, fstonly = T) : could not find function "fstat"

  #358 opened 10 months ago by nicolashazzi23
  3

• SNP weight values

  #357 opened a year ago by Tannervanorden
  0

• Inconsistant results with adegenet::spca and adespatial::multispati

  #355 opened a year ago by arthurdegrandpre
  0

• accessor nAll doesn't work on genindSummary

  #354 opened a year ago by romunov
  0

• linkage mappers

  #353 opened a year ago by zinstan
  0

• scatter error

  #352 opened a year ago by cfz1998
  3

• genet.dist not working for populations with large difference in sample size

  #351 opened a year ago by georgeomics
  3

• permutations running gene.dist

  #350 opened 2 years ago by Humminglipe
  0

• Screeplot() function for sPCA is extremely slow.

  #349 opened 2 years ago by cms2775
  0

• NA.char other than "-9" lead to potential problems with Microsat data

  #348 opened 2 years ago by grolshausen
  0

• Majority of variance explained by LA1

  #347 opened 2 years ago by Repti34
  0

• fix short bool

  #345 opened 2 years ago by zkamvar
  0

• failing CRAN check in C23 mode

  #341 opened 2 years ago by zkamvar
  2

• Compoplot of DPAC assigning individuals complete membership of clusters issue

  #343 opened 2 years ago by mattbareno
  4

• vcfR2genlight does not calculate loc.all field

  #340 opened 2 years ago by frederikvand
  1

• adegenate

  #342 opened 2 years ago by zinstan
  1

• CRAN Errors 2022-09

  #337 opened 2 years ago by zkamvar
  0

• Parallel option for find.clusters and dapc?

  #339 opened 2 years ago by ac-harris
  1

• DNAbin2genind and ambiguity codes from Fasta

  #336 opened 2 years ago by burbrink
  1

• Expected heterozygosity

  #334 opened 2 years ago by ettorefedele
  0

• as.matrix.genind: NA.method="mean" doesn't work

  #331 opened 2 years ago by ltalignani
  3

• RIPLEY: remove tripack and akima from Suggests

  #332 opened 2 years ago by zkamvar
  0

• `dim()` primitive behavior change with dist objects on load

  #308 opened 2 years ago by zkamvar
  4

• Better handling of parallel computation (or lack of) for Windows users

  #313 opened 2 years ago by courtiol
  3

• PCA result of glPca is quite different from plink

  #327 opened 3 years ago by cpwater
  1

• xval error object 'out' not found

  #330 opened 3 years ago by nlv209
  1

• `summary.spca` not working when `spca` run on matrices

  #328 opened 3 years ago by lvclark
  2

• genind2df() doesn't work for 'rupica' when 'oneColPerAll = TRUE'

  #320 opened 3 years ago by dfriend21
  1

• Does read.genepop really needs `ncode`?

  #326 opened 3 years ago by courtiol
  0

• Strata for running AMOVA

  #325 opened 3 years ago by laiajulianamu
  1

• PCoA plot problems

  #324 opened 3 years ago by laiajulianamu
  1

• cross validation is slow

  #322 opened 3 years ago by pdimens
  3

• Connection network not displaying connections when plotting results of sPCA

  #321 opened 3 years ago by z-j-r
  0

• the obtained graph doesn't represent individuals as dots in DAPC

  #319 opened 3 years ago by kopelol
  5

• Move spdep to suggests

  #315 opened 3 years ago by zkamvar
  0

• ERROR: number of cluster centres must lie between 1 and nrow(x)

  #312 opened 3 years ago by kopelol
  3

• Error in glPca(gl.fish, nf = 3, parallel = TRUE) : NAs detected in the vector of means

  #305 opened 3 years ago by OmidJa
  9

• New release to add missing doc on snapclust

  #309 opened 3 years ago by thibautjombart
  1

• Remove exportPattern() from NAMESPACE

  #311 opened 3 years ago by zkamvar
  1

• Issues with June 5, 2021 Tutorial

  #307 opened 3 years ago by neellab-umd
  8

• glPca and dapc freezing -- am I picking the wrong nf?

  #304 opened 4 years ago by konradtaube
  1

• What to pass to find.clusters when doing PCA first?

  #303 opened 4 years ago by nicolettacommins
  0

• there is no package called ‘units’

  #302 opened 4 years ago by patrilia001
  1