thorellk

thorellk's Stars

• xavierdidelot/TransPhylo

  Reconstruction of transmission trees using genomic data

  Language:R6022

• xavierdidelot/ClonalFrameML

  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

  Language:C++10827

• xavierdidelot/BactDating

  Bayesian inference of ancestral dates on bacterial phylogenetic trees

  Language:R8417

• tipputa/Circular-genome-visualizer

  Language:Python41

• janepipistrelle/bacterial_GWAS_tutorial

  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop

  1918

• jessiewu/bacterialGWAS

  A pipeline for performing genome-wide association tests for bacterial genomes.

  Language:R2816

• cran/PopGenome

  :exclamation: This is a read-only mirror of the CRAN R package repository. PopGenome — An Efficient Swiss Army Knife for Population Genomic Analyses

  Language:R164

• sanger-pathogens/snp-sites

  Finds SNP sites from a multi-FASTA alignment file

  Language:C24150

• DReichLab/AdmixTools

  Tools test whether admixture occurred and more

  Language:C18364

• tseemann/snippy

  :scissors: :zap: Rapid haploid variant calling and core genome alignment

  Language:Perl481115

• AdmiralenOla/Scoary

  Pan-genome wide association studies

  Language:Python15034

• moritzbuck/Pyscratches

  Language:Python1

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.2k605

• tseemann/prokka

  :zap: :aquarius: Rapid prokaryotic genome annotation

  Language:Perl849226

• sanger-pathogens/Roary

  Rapid large-scale prokaryote pan genome analysis

  Language:Perl324189

• minrk/sbw2016-jupyter

  IPython and Jupyter tutorial for SBW 2016

  Language:Jupyter Notebook42

• mskwark/genomeDCA

  Language:Matlab52

• cmbio/hirbin

  Hirbin repository

  Language:Python5