timholy
Neuroscientist and developer of the Julia language and its packages, including many developer tools and those of the @JuliaImages organization
Washington University in St. LouisSt. Louis, Missouri, USA
Pinned Repositories
AdvancedScientificComputing
A short course on Julia and open-source software development
CodeTracking.jl
It's editing-time, do you know where your methods are?
FlameGraphs.jl
Analysis of profiling data using trees
MethodAnalysis.jl
Utilities to analyze Julia's method tables
ProfileView.jl
Visualization of Julia profiling data
ProgressMeter.jl
Progress meter for long-running computations
QuadDIRECT.jl
Global optimization without derivatives
Rebugger.jl
An expression-level debugger for Julia with a provocative command-line (REPL) user interface
Revise.jl
Automatically update function definitions in a running Julia session
SnoopCompile.jl
Provide insights about latency (TTFX) for Julia packages
timholy's Repositories
timholy/Revise.jl
Automatically update function definitions in a running Julia session
timholy/ProgressMeter.jl
Progress meter for long-running computations
timholy/ProfileView.jl
Visualization of Julia profiling data
timholy/SnoopCompile.jl
Provide insights about latency (TTFX) for Julia packages
timholy/Rebugger.jl
An expression-level debugger for Julia with a provocative command-line (REPL) user interface
timholy/CodeTracking.jl
It's editing-time, do you know where your methods are?
timholy/MethodAnalysis.jl
Utilities to analyze Julia's method tables
timholy/FlameGraphs.jl
Analysis of profiling data using trees
timholy/PkgCacheInspector.jl
Inspect the contents of Julia package cache files
timholy/Ratios.jl
Faster Rational-like types for Julia
timholy/ScheduleMeetings.jl
timholy/IRCodeInterpreter.jl
A toy demonstration of interpreter speed for JuliaCon 2024
timholy/AdmissionSuite.jl
Planning, managing, and analyzing offers of admission
timholy/AssignGroups.jl
Assign students to collaborative groups
timholy/MolecularGraph.jl
Graph-based molecule modeling toolkit for cheminformatics
timholy/AbstractDifferentiation.jl
An abstract interface for automatic differentiation.
timholy/Aqua.jl
Auto QUality Assurance for Julia packages
timholy/BioAlignments.jl
Sequence alignment tools
timholy/BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
timholy/LineSearches.jl
Line search methods for optimization and root-finding
timholy/Makie.jl
Interactive data visualizations and plotting in Julia
timholy/MIToS.jl
Mutual Information Tools for protein Sequence analysis in Julia
timholy/NLLSsolver.jl
An optimizer of robustified Non-Linear Least Squares problems
timholy/NLPModels.jl
Data Structures for Optimization Models
timholy/NonNegLeastSquares.jl
Some nonnegative least squares solvers in Julia
timholy/PDMats.jl
Uniform Interface for positive definite matrices of various structures
timholy/Pioneer.jl
timholy/ProtPlot.jl
Protein ribbon plots implemented in Julia using GLMakie
timholy/PyPlot.jl
Plotting for Julia based on matplotlib.pyplot
timholy/ZernikePolynomials.jl
A package to work with Zernike Polynomials in the Julia programming language.