timwahoo's Stars
tensorflow/tensorflow
An Open Source Machine Learning Framework for Everyone
pytorch/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
moby/moby
The Moby Project - a collaborative project for the container ecosystem to assemble container-based systems
facebookresearch/segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
bowang-lab/MedSAM
Segment Anything in Medical Images
apptainer/singularity
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
docker-library/docker
Docker Official Image packaging for Docker
apptainer/apptainer
Apptainer: Application containers for Linux
openmedlab/MedLSAM
MedLSAM: Localize and Segment Anything Model for 3D Medical Images
SuperElastix/elastix
Official elastix repository
ReproNim/neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
mrirecon/bart
BART: Toolbox for Computational Magnetic Resonance Imaging
MIC-DKFZ/HD-BET
MRI brain extraction tool
mnesarco/MarzWorkbench
FreeCAD Workbench for guitar design
pehses/twixtools
python file reader/writer for Siemens MRI raw data + compression utility
NeuroDesk/neurodesktop
The plug-and-play, browser-accessible, containerised data analysis environment.
rekalantar/MedSegmentAnything_SAM_LungCT
The code to finetune SAM with bounding box prompt for segmentation of the lungs on CT
korbinian90/CLEARSWI.jl
improved susceptibility weighted imaging using multi-echo aquisitions
NeuroDesk/neurocontainers
The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines
korbinian90/ASPIRE
MRI phase combination algorithms for array-coils
liangfu/bet2
standalone Brain Extraction Tool (bet2), released by
korbinian90/QuantitativeSusceptibilityMappingTGV.jl
neuropoly/t2star-mapping
Collection of scripts to fit T2* MRI data
stebo85/Interactive-QSM-ISMRM-educational-talk
This interactive notebook illustrates concepts from my QSM educational talk at ISMRM 2021
ypauchard/t2mapping
ITK-based T2 mapping
neuropoly/lesion-mapping
Set of tools for mapping lesions in the brain and/or spinal cord
gattia/PyMap
T2 mapping software written in python
npnl/T2-Maps
timwahoo/neurocontainers
The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines