ting-hsuan-chen

Molecular and Computational Biologist in progress @PlantandFoodResearch. Love transposon biology and epigenetics.

Plant and Food ResearchLincoln

Pinned Repositories

TE_ExpressionCandidate
A repo for the scripts used in the manuscript "Comprehensive analysis of both long and short read transcriptomes of a clonal and a seed-propagated model plant species reveal the prerequisites for transcriptional activation of autonomous and non-autonomous transposons in plants" (https://www.researchsquare.com/article/rs-859670/v1)
Language:R20
sandpit
A demonstration repository
Language:Jupyter Notebook00
EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
Language:Python13119
TEtrimmer
TEtrimmer: a novel tool to automate manual curation of transposable elements
Language:Python622
MCHelper
MCHelper: An automatic tool to curate transposable element libraries
Language:Python273
sandpit
A demonstration repository
Language:Jupyter Notebook132

ting-hsuan-chen/sandpit
A demonstration repository
Language:Jupyter Notebook
ting-hsuan-chen/TE_ExpressionCandidate
A repo for the scripts used in the manuscript "Comprehensive analysis of both long and short read transcriptomes of a clonal and a seed-propagated model plant species reveal the prerequisites for transcriptional activation of autonomous and non-autonomous transposons in plants" (https://www.researchsquare.com/article/rs-859670/v1)
Language:R2