Pinned Repositories
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
Cecret
Nextflow workflow for our analysis of SARS-COV-2
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
General_LW_scripts
The scripts that UPHL uses to download things from basespace and run respective workflows
Grandeur
UPHL's Reference Free Pipeline
miniwdl
Workflow Description Language developer tools & local runner
mycosnp
mycosnp-nf
nf-core/mycosnp
walkercreek
A nextflow pipeline that accommodates different sequencing technologies (Illumina or Nanopore), sample types (clinical or wastewater), and viral targets (Influenza or RSV).
tives82's Repositories
tives82/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
tives82/Cecret
Nextflow workflow for our analysis of SARS-COV-2
tives82/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
tives82/General_LW_scripts
The scripts that UPHL uses to download things from basespace and run respective workflows
tives82/Grandeur
UPHL's Reference Free Pipeline
tives82/miniwdl
Workflow Description Language developer tools & local runner
tives82/mycosnp
tives82/mycosnp-nf
nf-core/mycosnp
tives82/nf-core_modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
tives82/nf-core_viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
tives82/nf-flu
Influenza genome analysis Nextflow workflow
tives82/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
tives82/staphb_toolkit
Python Toolkit for using containerized programs in either Singularity or Docker
tives82/TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
tives82/test_datasets
Test data to be used for automated testing with the nextflow pipelines
tives82/walkercreek
A nextflow pipeline for influenza genome analysis
tives82/wtfpython
What the f*ck Python? 😱