Pinned Repositories
bcftools
This is the official development repository for BCFtools. To compile, the bcftools+calling branch of htslib is needed: git clone --branch=bcftools+calling git://github.com/samtools/htslib.git htslib
Dropbox-Uploader
Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.
freebayes
Bayesian haplotype-based polymorphism discovery and genotyping.
lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
metasearch
Search aggregator for Slack, Google Docs, GitHub, and more :mag:
nz-river-level-alerts
picard
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
PennCNV
Copy number vaiation detection from SNP arrays
tjjjohnson's Repositories
tjjjohnson/freebayes
Bayesian haplotype-based polymorphism discovery and genotyping.
tjjjohnson/bcftools
This is the official development repository for BCFtools. To compile, the bcftools+calling branch of htslib is needed: git clone --branch=bcftools+calling git://github.com/samtools/htslib.git htslib
tjjjohnson/Dropbox-Uploader
Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.
tjjjohnson/lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
tjjjohnson/metasearch
Search aggregator for Slack, Google Docs, GitHub, and more :mag:
tjjjohnson/nz-river-level-alerts
tjjjohnson/picard
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
tjjjohnson/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities