/afids-data

curated anatomical landmarks placements for common neuroimaging datasets

Primary LanguageJupyter NotebookMIT LicenseMIT

afids-data

Magnetic resonance imaging datasets with anatomical fiducials for quality control and registration

In this GitHub repo, you can find:

  1. Markups Comma-separated values file (i.e., *.fcsv extension) files for both templates and datasets (along side template scans if size permits; otherwise *coordinate.json will have instructions for download).
  2. Jupyter notebooks involved in creation of the JavaScript Object Notation (i.e., *.json) which is an adaptation from BIDS Appendix VIII on Coordinate systems.
  3. Information about rater experience and background

Compressed NIfTI-1 format (i.e., .nii.gz extension) for datasets involved in this study are available on OpenNeuro:

  1. Stereotactic Neurosurgery 7T Control Dataset (SNSX; n = 32): https://openneuro.org/datasets/ds004241/versions/1.0.0
  2. London Health Sciences Center Parkinson's Disease Dataset (LHSC-PD ; n = 40): Awaiting ethics approval for release of scans; .fcsv available
  3. 100 Unrelated Humman Connectome Project subset (HCP; n = 30): https://openneuro.org/datasets/ds004253/versions/1.0.0
  4. Open Access Series of Imaging Studies subset (OASIS; n = 30): awaiting correspondence from OASIS to release scans; .fcsv available