Pinned Repositories
advanced-git
adwi
afids-auto-harness
afids-CNN
Automatic localization and identification of salient brain landmarks in healthy and Parkinson's disease brains using U-Net architecture
afids-data
curated anatomical landmarks placements for common neuroimaging datasets
afids-data-datalad
All proposed AFIDs-Data DataLad datasets
afids-groundtruth-hcp
AFIDs ground truth data for HCP subset
afids-groundtruth-snsx
AFID placements for the SNSX datasets
afids-hcp-separate
AFIDs-HCP data organized as two separate datasets
snakebids2dicom
Cookiecutter-based snakebids2dicom
tkkuehn's Repositories
tkkuehn/advanced-git
tkkuehn/afids-CNN
Automatic localization and identification of salient brain landmarks in healthy and Parkinson's disease brains using U-Net architecture
tkkuehn/afids-data-datalad
All proposed AFIDs-Data DataLad datasets
tkkuehn/afids-groundtruth-snsx
AFID placements for the SNSX datasets
tkkuehn/AFIDs-OASIS
tkkuehn/afids-validator
Validator for the anatomical fiducial placement protocol
tkkuehn/aoc21
tkkuehn/binder-tutorial-datalad
Binder for Brainhack Western 2021 DataLad Tutorial
tkkuehn/afids-regRF
automatic localization of anatomical landmarks using random forest regression
tkkuehn/afids-snsx
AFIDs and Images for the SNSX dataset
tkkuehn/afids-snsx-separate
Separate images and AFID placements for SNSX
tkkuehn/BADE-evidence-integration
tkkuehn/bids-snsx
BIDS-formatted SNSX images
tkkuehn/boutiques
A cross-platform descriptive command-line framework for applications
tkkuehn/BrainhackWestern.github.io
tkkuehn/Cerebro_Viewer
A pythonic 3D viewer to visualize and plot brains and neuroimaging data
tkkuehn/cfmm2tar
Tools for dicom-server retrieval, tarballing and conversion to bids
tkkuehn/conp-dataset
:open_file_folder: A DataLad dataset for CONP
tkkuehn/conp-dats-editor
This holds the code for the DATS editor GUI linked in the portal
tkkuehn/conp-portal
:bar_chart: The CONP data portal
tkkuehn/denoise-fmri
Snakemake BIDS app for denoising fmriprep, uses the snakebids package for running snakemake workflow as bids app
tkkuehn/example-snakemake
tkkuehn/hbn_postprocessing
tkkuehn/mri_degad
tkkuehn/probabilistic-reasoning-task
tkkuehn/pytest
The pytest framework makes it easy to write small tests, yet scales to support complex functional testing
tkkuehn/semt-encoding
tkkuehn/snakebids
Snakemake + BIDS
tkkuehn/sternberg-working-memory-task
tkkuehn/test-experiment