Pinned Repositories
FAIR-biomed
Browser extension for accessing open data resources in the biomedical domain
chsk
Library for dynamic data visualization and story-telling with React
embedding_constraint_callback
a callback for pytorch-lightning that constrains training of Embedding components
GeneticThesaurus
Thesaurus for genetic variants
ksharp
cluster sharpening
mlensemble
build ensembles of machine-learning models
MultiPattern
Multi-pattern discovery in R
Rcssplot
R plots styled with css
Rthresholdout
R implementation of reusable holdout
umap
Uniform Manifold Approximation and Projection - R package
tkonopka's Repositories
tkonopka/umap
Uniform Manifold Approximation and Projection - R package
tkonopka/Rcssplot
R plots styled with css
tkonopka/GeneticThesaurus
Thesaurus for genetic variants
tkonopka/MultiPattern
Multi-pattern discovery in R
tkonopka/mlensemble
build ensembles of machine-learning models
tkonopka/chsk
Library for dynamic data visualization and story-telling with React
tkonopka/embedding_constraint_callback
a callback for pytorch-lightning that constrains training of Embedding components
tkonopka/ksharp
cluster sharpening
tkonopka/crossmap
crossmap
tkonopka/makealive
Dynamic web content through controlled javascript
tkonopka/phenoscoring
incremental data integration for scoring genotype-disease associations
tkonopka/aws-sandbox
sandbox
tkonopka/bamsnap
tkonopka/batchFisher
fast calculation of batches of Fisher tests
tkonopka/consonance
consonance testing
tkonopka/correcting-ml
Correcting machine learning models using calibrated ensembles with 'mlensemble'
tkonopka/crossmap-manuscript
tkonopka/image_recipes
command line scripts for image conversions (pdf, png, tex, webp)
tkonopka/ingredients
Model ingredients - model level feature effects and feature importance
tkonopka/material-design-icons
Material Design icons by Google
tkonopka/medaka
Sequence correction provided by ONT Research
tkonopka/minimal-react-app-with-wasm
A minimal React App that uses C++ code via WebAssembly
tkonopka/mouse-embeddings
dimensional reduction of mouse phenotype data
tkonopka/nivo
nivo provides a rich set of dataviz components, built on top of the awesome d3 and React libraries
tkonopka/pan-ontology-ml
A study of ontologies using machine learning
tkonopka/pytorch-lightning
The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate.
tkonopka/shrt
Functions for short R code
tkonopka/swfdr
Science-wise false discovery rate package
tkonopka/textheat
text with heatmap for React
tkonopka/tkonopka
Config files for my GitHub profile.