tlnagy/Crispulator.jl

Issues

• Added functionalities and saving raw table

  #67 opened a year ago by fgualdr
  0

• Non-zero WT behavior subtly breaks guide quality model

  #65 opened a year ago by tlnagy
  0

• TagBot trigger issue

  #58 opened 2 years ago by JuliaTagBot
  4

• Consolidate cells and guides

  #63 opened 2 years ago by tlnagy
  0

• Improve flexibility of screen design

  #62 opened 2 years ago by tlnagy
  0

• Modularize and add integration tests

  #43 opened 2 years ago by tlnagy
  0

• Test all the things

  #22 opened 9 years ago by tlnagy
  0

• Add Julia 1.0 support

  #54 opened 2 years ago by tlnagy
  0

• Info about upcoming removal of packages in the General registry

  #55 opened 5 years ago by KristofferC
  1

• Exporting count matrix

  #48 opened 7 years ago by hyunhwan-jeong
  16

• "run.jl config" is not working

  #51 opened 7 years ago by hyunhwan-jeong
  4

• "-Inf" values of obs_phenotype

  #52 opened 7 years ago by hyunhwan-jeong
  5

• Performance of analysis code has degraded

  #38 opened 7 years ago by tlnagy
  3

• Build out documentation

  #44 opened 7 years ago by tlnagy
  1

• Error tagging new release

  #50 opened 7 years ago by attobot
  0

• error on `exp` mode

  #46 opened 8 years ago by hyunhwan-jeong
  1

• Things remaining to do for slim crispulator

  #45 opened 8 years ago by tlnagy
  0

• Improve terminology

  #37 opened 8 years ago by tlnagy
  4

• Current design crashes with latest stats packages

  #42 opened 8 years ago by tlnagy
  4

• Add support for yaml encoded run parameters

  #36 opened 8 years ago by tlnagy
  5

• Plotting on 32-bit windows is broken

  #41 opened 8 years ago by tlnagy
  0

• Random bugs in library plotting

  #14 opened 9 years ago by tlnagy
  0

• Specific pairwise comparisons to explore

  #29 opened 9 years ago by tlnagy
  0

• Test simulation on Windows

  #40 opened 9 years ago by tlnagy
  0

• Restructure library.jl

  #39 opened 9 years ago by tlnagy
  0

• Add noise to growth assay

  #35 opened 9 years ago by tlnagy
  0

• scan_rep_space analysis is crashing on server

  #34 opened 9 years ago by tlnagy
  2

• Add analysis that generates plots for various runs

  #33 opened 9 years ago by tlnagy
  0

• Refactor experiments.jl

  #31 opened 9 years ago by tlnagy
  0

• Build out debug vs full runs of experiments

  #32 opened 9 years ago by tlnagy
  0

• Separating increasing and decreasing genes yield poor AUPRC/venn scores

  #30 opened 9 years ago by tlnagy
  0

• Comparing methods code is broken

  #18 opened 9 years ago by tlnagy
  0

• Split out and modularize plotting code

  #8 opened 9 years ago by tlnagy
  1

• Analysis

  #12 opened 9 years ago by tlnagy
  6

• auprc computed incorrectly if first label is a true hit

  #28 opened 9 years ago by tlnagy
  0

• Add additional quality metrics

  #25 opened 9 years ago by tlnagy
  3

• auroc computation checks != negative label, not == positive label

  #27 opened 9 years ago by tlnagy
  0

• auprc implementation is unnecessarily O(n^2)

  #26 opened 9 years ago by tlnagy
  0

• Allow for multiple doublings before sampling

  #24 opened 9 years ago by tlnagy
  3

• Alternative sigmoid function

  #23 opened 9 years ago by tlnagy
  1

• Refactor into package

  #17 opened 9 years ago by tlnagy
  1

• Running tests from terminal crashes due to loading full run script

  #21 opened 9 years ago by tlnagy
  0

• Build out testing infrastructure

  #16 opened 9 years ago by tlnagy
  0

• Clean up terminology and improve consistency

  #15 opened 9 years ago by tlnagy
  0

• Unexpected behavior by decreasing genes

  #20 opened 9 years ago by tlnagy
  4

• Normalize to median of negative controls

  #19 opened 9 years ago by tlnagy
  1

• Run() should be general

  #10 opened 9 years ago by tlnagy
  3

• Handle growth assays

  #11 opened 9 years ago by tlnagy
  2

• Cleanup at the end of simulations horribly slow

  #13 opened 9 years ago by tlnagy
  1

• Linear function isn't linear

  #9 opened 9 years ago by tlnagy
  0