Pinned Repositories
chemutils
Convenience functions wrapping pubchempy
hong2p
Extracting / processing / storing fluorescence traces, and associating them with odor information.
arduino_daq
Get analog data to your computer with Arduino and Python.
deltabot
Calculations to help design delta bots, a common parallel robot design for pick and place machines, as well as the fly handling robot from the 2015 Nature paper.
drosolf
Cell responses, transformations, and cell type information useful in Drosophila olfactory neuroscience.
freecad_finder
Finds installed FreeCAD libraries and adds them to Python sys.path, for use in standalone scripts.
ijroi
Reads ImageJ ROI files into numpy arrays.
pymistake
Put on PYTHONPATH to get better tracebacks and automatic postmortem debugging.
sc2_replay_analyzer
shimadzu
For dealing with output from Shimadzu GCMSSolutions software.
tom-f-oconnell's Repositories
tom-f-oconnell/drosolf
Cell responses, transformations, and cell type information useful in Drosophila olfactory neuroscience.
tom-f-oconnell/freecad_finder
Finds installed FreeCAD libraries and adds them to Python sys.path, for use in standalone scripts.
tom-f-oconnell/pubchemprops
A convenient wrapper around PubChem PUG REST API that allows to search for many compound properties available at PubChem with ease
tom-f-oconnell/ijroi
Reads ImageJ ROI files into numpy arrays.
tom-f-oconnell/alicat
Python driver and command line tool for Alicat mass flow controllers.
tom-f-oconnell/caltech_name_checker
tom-f-oconnell/ChemSpiPy
Python wrapper for the ChemSpider API
tom-f-oconnell/choice
Design files and code for an automated two choice olfactory assay with Drosophila.
tom-f-oconnell/crimpd_plotter
Plots training progress from CSVs exported from the Crimpd app.
tom-f-oconnell/door_python
Scripts for loading DoOR responses (from R) into Python, as well as checking / processing them.
tom-f-oconnell/dotfiles
Linux configuration files.
tom-f-oconnell/hong_airflow
Apache Airflow based lab workflow automation.
tom-f-oconnell/hong_intranet
Site to view and link data with analysis, maybe with some other extras.
tom-f-oconnell/LTGCapacitor
RoR2 mod that adds the LTG "Now" sound effect every time royal capacitor is used.
tom-f-oconnell/misc
Mostly playing around with example code to figure things out.
tom-f-oconnell/mysterium
TKL keyboard that can be entirely assembled using only through hole components, including usb type-c
tom-f-oconnell/nas_scripts
Scripts for my home NAS
tom-f-oconnell/olfactometer
Arduino olfactometer for operation via USB host computer.
tom-f-oconnell/pylive
Query and control Ableton Live from Python
tom-f-oconnell/qmk_firmware
Open-source keyboard firmware for Atmel AVR and Arm USB families
tom-f-oconnell/qmk_yj
tom-f-oconnell/scene-viewer
Allows viewing of scene textures from within compendiums
tom-f-oconnell/scripts
Collection of utility scripts, not all related
tom-f-oconnell/seaborn
Statistical data visualization using matplotlib
tom-f-oconnell/SimpylFold
No-BS Python code folding for Vim
tom-f-oconnell/stimuli
Coordinate Arduino stimulus control with computer controlled data acquistion.
tom-f-oconnell/suite2p
cell detection in calcium imaging recordings
tom-f-oconnell/test
One off test scripts
tom-f-oconnell/tom_olfactometer_configs
tom-f-oconnell/YouCompleteMe
A code-completion engine for Vim