Pinned Repositories
chemutils
Convenience functions wrapping pubchempy
hong2p
Extracting / processing / storing fluorescence traces, and associating them with odor information.
arduino_daq
Get analog data to your computer with Arduino and Python.
deltabot
Calculations to help design delta bots, a common parallel robot design for pick and place machines, as well as the fly handling robot from the 2015 Nature paper.
drosolf
Cell responses, transformations, and cell type information useful in Drosophila olfactory neuroscience.
freecad_finder
Finds installed FreeCAD libraries and adds them to Python sys.path, for use in standalone scripts.
ijroi
Reads ImageJ ROI files into numpy arrays.
pymistake
Put on PYTHONPATH to get better tracebacks and automatic postmortem debugging.
sc2_replay_analyzer
shimadzu
For dealing with output from Shimadzu GCMSSolutions software.
tom-f-oconnell's Repositories
tom-f-oconnell/shimadzu
For dealing with output from Shimadzu GCMSSolutions software.
tom-f-oconnell/pymistake
Put on PYTHONPATH to get better tracebacks and automatic postmortem debugging.
tom-f-oconnell/sc2_replay_analyzer
tom-f-oconnell/alicat_flow_control
ros package for controlling alicat flow controllers
tom-f-oconnell/ansible-nas
Build a full-featured home server or NAS replacement with an Ubuntu box and this playbook.
tom-f-oconnell/boardgame_helper
To have your computer watch board games (starting with Risk) and recommend moves.
tom-f-oconnell/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
tom-f-oconnell/cpython
The Python programming language
tom-f-oconnell/flask_vue_sio_example
Simple bare minimum example demonstrating how to use flask, vue and socketio together.
tom-f-oconnell/flypush
For maintaining information on Drosophila bottles / vials, with a combination of an SQL database and a label printer.
tom-f-oconnell/fmech
tom-f-oconnell/hh_test
tom-f-oconnell/latex
Python wrappers for calling LaTeX/building LaTeX documents.
tom-f-oconnell/maple_pipettor
Serological pipetting with MAPLE fly handling robot
tom-f-oconnell/MAPLEControlSoftware
Control software for the Drosophila handling robot MAPLE (Modular Automated Platform for Large-scale Experiments)
tom-f-oconnell/MAPLEHardware
CAD & drawings for the Drosophila handling robot code-named Santa Fe.
tom-f-oconnell/metatools
Tools for saving, checking, and storing extra metadata in ROS parameters.
tom-f-oconnell/midi_practice
tom-f-oconnell/mpl_examples
Matplotlib examples I wanted to focus on.
tom-f-oconnell/nanopb-arduino
Arduino stream wrappers for nanopb
tom-f-oconnell/ORN-WL-gain-control
Investigate impact of ORN adaptation on odor reconstruction fidelity
tom-f-oconnell/puff-model
tom-f-oconnell/pyliblo
Python bindings for the liblo OSC library
tom-f-oconnell/pyqtgraph
Fast data visualization and GUI tools for scientific / engineering applications
tom-f-oconnell/ros_net_test_simple
Adapting talker / listener tutorial to multiple machine setting.
tom-f-oconnell/scikit-learn
scikit-learn: machine learning in Python
tom-f-oconnell/skelerator
Neuron toy data generator
tom-f-oconnell/sorption_olfactometer
tom-f-oconnell/synister_data
tom-f-oconnell/voluseg
pipeline for volumetric cell segmentation