tom-f-oconnell/skelerator

Neuron toy data generator

Skelerator

Neural toy data generator.

Installation

1. Install graph-tool.

2. Install the package.

   git clone https://github.com/nilsec/skelerator.git
   
   cd skelerator
   
   python setup.py install
   

Example Usage

Generate a toy segmentation with skeletons via:

    from skelerator import create_segmentation

    shape = np.array([100, 100, 100])
    n_objects = 20
    points_per_skeleton = 5
    interpolation = "linear"
    smoothness = 2
    write_to = "./toy_segmentation"

    create_segmentation(shape, n_objects, points_per_skeleton, interpolation, smoothness, write_to)