Pinned Repositories
Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
bamsifter
normalizes coverage depth by position-specific read sampling in a bam file to give a target max depth
bioruby
bioruby
Bioruby-use
Codes using bioruby library
Cairo
R graphics device using cairo graphics library for creating high-quality output
canu
A single molecule sequence assembler for genomes large and small.
crisporWebsite
All source code of the crispor.org website
ffton
Fast File Transfer over NAT
RPostgreSQL
Automatically exported from code.google.com/p/rpostgresql
TCC
R package for tag count comparison
tomoakin's Repositories
tomoakin/RPostgreSQL
Automatically exported from code.google.com/p/rpostgresql
tomoakin/bioruby
bioruby
tomoakin/Bioruby-use
Codes using bioruby library
tomoakin/ffton
Fast File Transfer over NAT
tomoakin/TCC
R package for tag count comparison
tomoakin/Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
tomoakin/bamsifter
normalizes coverage depth by position-specific read sampling in a bam file to give a target max depth
tomoakin/Cairo
R graphics device using cairo graphics library for creating high-quality output
tomoakin/canu
A single molecule sequence assembler for genomes large and small.
tomoakin/crisporWebsite
All source code of the crispor.org website
tomoakin/DepthHist
Calculate clone depth histogram in wig format from SAM/BAM
tomoakin/Duplex-Sequencing
tomoakin/FALCON
FALCON: experimental PacBio diploid assembler
tomoakin/HyperMut
A program to identify fragments with multiple substitutions and collect relevant statistics
tomoakin/jbrowse
A modern genome browser built with JavaScript and HTML5.
tomoakin/Jin-annot
Scripts for annotating a genome with RNA-seq and Protein sequence data.
tomoakin/klab
Kasahara lab. public repository.
tomoakin/minialign
fast and accurate alignment tool for PacBio and Nanopore long reads
tomoakin/NOVOPlasty
NOVOPlasty - The organelle assembler
tomoakin/PhyloTrees.jl
Phylogenetic trees in Julia
tomoakin/Platanus_B
De novo genome assembler for bacterial genomes
tomoakin/rails-contigdb_pame3
tomoakin/ruby-dbi
Ruby/DBI, a database abstraction layer and interface
tomoakin/SCD30-Raspberry-Pi
Python library for Raspberry pi and the SCD30 CO2 sensor
tomoakin/SOLiD
Software tools for processing SOLiD sequence data
tomoakin/TGEW
A set of small scripts that make things easier for users of Sun Grid Engine
tomoakin/UMI_SC
tomoakin/utgb
University of Tokyo Genome Browser