Pinned Repositories
5years
biobert
BioBERT: a pre-trained biomedical language representation model
Biocircos.js
BioCircos.js - interactive circos for biological data
BioNER-Progress
This repository aims to track the progress in BioNER and give a related paper list and an overview of the state-of-the-art (SOTA).
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
clingen-svi-comp_calibration
Data and code associated with ClinGen-SVI computational sub-group's calibration paper
ComplexHeatmap
Make Complex Heatmaps
DCNet
DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG
deepG
DeepG, or 'Deep Genomics', is a R library which allows to train and apply deep neural networks on genomic datasets
machinelearning
My blogs and code for machine learning. http://cnblogs.com/pinard
tongyt1225's Repositories
tongyt1225/biobert
BioBERT: a pre-trained biomedical language representation model
tongyt1225/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
tongyt1225/clingen-svi-comp_calibration
Data and code associated with ClinGen-SVI computational sub-group's calibration paper
tongyt1225/deepG
DeepG, or 'Deep Genomics', is a R library which allows to train and apply deep neural networks on genomic datasets
tongyt1225/DeepHINT
Deep learning for HIV
tongyt1225/DeepTCR_COVID19
Deep learning identifies antigenic determinants of severe SARS-CoV-2 infection within T-cell repertoires
tongyt1225/dna_lstm
LSTM for binary DNA sequence classification
tongyt1225/docsplit
Break Apart Documents into Images, Text, Pages and PDFs
tongyt1225/DoubletDetection
Doublet detection in single-cell RNA-seq data.
tongyt1225/E_coli_RNA-Seq_analysis
Scripts for RNA-Seq analysis
tongyt1225/Five-Fold-Cross-Validation-of-CNN-Model-using-Image-Sentiment-Prediction
Five-Fold-Cross-Validation-of-CNN-Model-using-Image-Sentiment-Prediction
tongyt1225/GeneSwitches
Ordering gene-expression and functional events in single-cell experiments
tongyt1225/GSEA_R
Updated implementation of the GSEA-P R application for modern R distributions
tongyt1225/Human_Keloid_scRNAseq
single RNA-seq analysis of human keloid samples
tongyt1225/HumanDiseaseOntology
Repository for the Human Disease Ontology.
tongyt1225/ISA-Analysis-Pipeline
tongyt1225/Mammary_snATAC-seq
Single cell ATAC-seq of mouse mammary cells
tongyt1225/OpenNRE
An Open-Source Package for Neural Relation Extraction (NRE)
tongyt1225/POI1030
tongyt1225/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
tongyt1225/rnn1
Implementation of Research paper, Deep Learning model for DNA Sequence Classification - Recurrent Neural Networks
tongyt1225/scEpath
An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
tongyt1225/scRNA-CellLines
single cell RNA sequencing of 8 breast cancer cell lines
tongyt1225/scRNAseq_PTC
tongyt1225/SemCat-CECCT
Semantic categorization of Chinese eligibility criteria in clinical trials
tongyt1225/sensoryfates_paper
Code for reproducibility
tongyt1225/SingleR
SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
tongyt1225/SnpEff
tongyt1225/SynSig
Software to create catalogs of synthetic mutational spectra and to evaluate mutational signature profiles extracted from them
tongyt1225/TeamTat
Text annotation tool for team collaboration