tongyt1225

tongyt1225's Stars

• Jia-Yu-Chen/RChIP

  Scripts for RChIP-seq Analysis

  Language:Shell87

• wanglabtongji/SCRIP

  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-cell resolution based on scATAC-seq.

  Language:Python18

• xuzhougeng/Learn-Bioinformatics-by-RNA-seq

  Language:R17184

• xuzhougeng/R-ChIP-data-analysis

  Language:Shell5115

• vpejaver/clingen-svi-comp_calibration

  Data and code associated with ClinGen-SVI computational sub-group's calibration paper

  Language:MATLAB54

• steverozen/SynSig

  Software to create catalogs of synthetic mutational spectra and to evaluate mutational signature profiles extracted from them

  Language:R93

• pcingola/SnpEff

  Language:Java24578

• hanbw/ebv_script

  Language:Python42

• sidhomj/DeepTCR_COVID19

  Deep learning identifies antigenic determinants of severe SARS-CoV-2 infection within T-cell repertoires

  Language:Python41

• nonnerdling/DeepHINT

  Deep learning for HIV

  Language:Python109

• lakshayg/tensorflow-build

  TensorFlow binaries supporting AVX, FMA, SSE

  23644

• LeVanSonTMT/Malware_classification_using_method_Word2Vector_and_MLP

  Malware Classification Method Based on Word Vector of Bytes and Multilayer Perception.

  Language:Python3

• siddhaling/Five-Fold-Cross-Validation-of-CNN-Model-using-Image-Sentiment-Prediction

  Five-Fold-Cross-Validation-of-CNN-Model-using-Image-Sentiment-Prediction

  Language:Python32

• cschin/DCNet

  DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG

  Language:Jupyter Notebook6916

• edianfranklin/autoencoder_for_cancer_subtype

  Language:Jupyter Notebook117

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.2k716

• aquaskyline/Clairvoyante

  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

  Language:Python17227

• manwaiii/DeepViral_3class

  Classification of RNA virus, DNA virus and bacterial reads by using CNN model.

  Language:Python1

• Moeinh77/Virus-DNA-classification-BERT

  Classification of 6 viruses including covid-19 based on their DNA sequences using Transformers

  Language:Jupyter Notebook156

• mgarort/NGSchool2018-Convolutional-neural-network

  Convolutional neural network (CNN) that classifies breast cancer types.

  Language:Jupyter Notebook2

• marc-vaisband/deepCNNvalid

  Validation of genetic variants from NGS data using Deep Convolutional Neural Networks

  Language:Python5

• seyonechithrananda/deep-bind-tensorflow

  TF-binding CNN model, trained on ChIP-SEQ sequence data to predict dna-protein binding interactions.

  Language:Jupyter Notebook33

• Ylenia1211/ProjectUni-CNN

  Replication of research article results: Rizzo, Riccardo, et al. "A deep learning approach to DNA sequence classification." International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics. Springer, Cham, 2015.". ML models were used: Naive Bayes, SVM, Random Forest; The CNN neural network was also implemented, respecting the modifications made to the LeNet-5 network in the research article.

  Language:Python1

• NikolayOskolkov/DeepLearningAncientDNA

  Here I show how to use Convolutional Neural Networks (CNNs) for Ancient DNA analysis

  Language:HTML158

• MedChaabane/DeepBind-with-PyTorch

  CNN architecture for predicting DNA binding sites for Transcription Factors

  Language:Jupyter Notebook4713

• shlomota/DeepViral

  edited version of DeepViral

  Language:Jupyter Notebook1

• onceupon/deep_learning_DNA

  classifying human DNA sequence and random ATCG sequences, using keras CNN

  Language:Jupyter Notebook222

• zeyneb-chiha/DNA-Sequences-classification-using-CNN

  Language:Jupyter Notebook2

• jerryji1993/DNABERT

  DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

  Language:Python570156

• dviraran/SingleR

  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

  Language:HTML26698