2-photon
There are 16 repositories under 2-photon topic.
flatironinstitute/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
phflot/flow_registration
Flow-Registration toolbox for 2P motion compensation
SWC-Advanced-Microscopy/BakingTray
Serial-section automated anatomy extension for ScanImage
SWC-Advanced-Microscopy/SimpleMScanner
Simple MATLAB scanning software for demo purposes
SWC-Advanced-Microscopy/SimplePyScanner
Simple Python scanning software for demo purposes
BaselLaserMouse/LaserControl
MATLAB control classes for lasers
flosfor/pvbs
PVBS (Prairie View Browsing Solution) - General-purpose GUI for electrophysiology (patch clamp) and calcium imaging
hjmh/fly2p
utility functions for analyzing (fly) calcium imaging data
ankushgpta2/2PhotonProcessor
Code for Important Processing Steps For .Tiff or .Raw Video Files Acquired From 2-Photon Imaging System + Completely Automated and With NWB Schema (.HDF5) Capability
CommanderPho/phoCrossDayAlignment
2-Photon Imaging Data Registration/Alignment Across Recording Days. Created for Apostolides Lab, rotation 2, Fall 2020.
jefferis/scanimage
read and analyse 2 photon images from ScanImage
NeLy-EPFL/utils2p
Utility functions for data generated with ThorImage and ThorSync.
tenss/image-analysis
Examples illustrating basic stages of analyzing calcium imaging data
lauraluebbert/ThorImage-Sync_2P-analysis
Notebook to analyze ThorImage + ThorSync 2-photon data with light stimulation.
MamiyaA/NeuralCodingOfLegProprioception_CalciumImagingAnalyses
Matlab scripts for analyzing calcium imaging data presented in "Neural Coding of Leg Proprioception in Drosophila" (Mamiya, Gurung, and Tuthill (2018) Neuron: DOI:https://doi.org/10.1016/j.neuron.2018.09.009)
shih-liang/CaImAn-pkgbuild
PKGBUILD of CaImAn for Archlinux