flatironinstitute/CaImAn

Issues

• How to specify temp files

  #1419 opened a month ago by ziqihugo
  4

• Misleading warning emitted when saving movie without file_name to hdf5 (e.g. doing motion correction without saving first)

  #1429 opened a month ago by ethanbb
  1

• Numpy support

  #1431 opened a month ago by darikoneil
  1

• L1_ratio in sparseNMF

  #1428 opened a month ago by clee162
  7

• The onACID's parameter init_batch cannot exceed the number of frames of the first file?

  #1427 opened a month ago by Heinrich2818
  2

• Tracking issue: Caiman and numpy 2.0

  #1354 opened 8 months ago by pgunn
  2

• RuntimeWarning: invalid value encountered in divide

  #1426 opened a month ago by clee162
  1

• The following packages are causing the inconsistency: - defaults/osx-arm64::conda-build==24.1.2=py311hca03da5_0

  #1424 opened 2 months ago by noah08642
  3

• Issues with installing/importing CaImAn using only conda-forge on a windows

  #1423 opened 2 months ago by isaacracine
  2

• 1P motion correction parameters

  #1418 opened 2 months ago by melkalliny
  0

• Add dependencies to `pyproject.toml`

  #1417 opened 2 months ago by sneakers-the-rat
  4

• Propose removing old unmaintained skcuda code

  #1416 opened 2 months ago by kushalkolar
  1

• IncompleteRead Error while trying to load demo videos

  #1414 opened 3 months ago by raymondwjang
  8

• unexpected number of cells identified by onACID in `demo_online_cnmfE.ipynb`

  #1413 opened 3 months ago by raymondwjang
  5

• Delete unwanted ROI directly from estimates.nb_view_components

  #1415 opened 3 months ago by zhouyi0812
  0

• Demo Notebook for onACID

  #1411 opened 3 months ago by raymondwjang
  3

• Poor outcome of PW-Rigid Motion Correction on 2P Data

  #1407 opened 4 months ago by mohammadsohaib
  4

• What is the best way to estimate event rate in 1p using CaImAn?

  #1408 opened 3 months ago by programerkotik
  1

• Saving motion corrected movies results in shifted image for multiple frames

  #1404 opened 3 months ago by smbaca
  5

• How do I change the path to the temp folder?

  #1401 opened 4 months ago by ichigomikako
  3

• How to disable logging?

  #1374 opened 4 months ago by nick-youngblut
  28

• environment issue when install caiman

  #1398 opened 4 months ago by Sonder-193
  13

• are red traces from two images comparable?

  #1403 opened 4 months ago by XiaoqianSun0104
  2

• motion correction breaks when tif file carries channel data

  #1393 opened 4 months ago by ashwin-miriyala
  2

• Installation Issues

  #1399 opened 4 months ago by CeeLo
  1

• way to executing demo notebook in bulk

  #1397 opened 4 months ago by kazugorira
  4

• 3D movie

  #1394 opened 4 months ago by rajlakshmi-sawale
  0

• "Bad file descriptor" error during processing

  #1388 opened 5 months ago by programerkotik
  3

• CaImAn GUI 'viewing component' param not working

  #1389 opened 5 months ago by caichangjia
  1

• Fine-grained logging, and/or CNMF.fit() logging adjustments

  #1376 opened 5 months ago by pgunn
  3

• Docs: add info on env variables

  #1373 opened 6 months ago by nick-youngblut
  8

• mult-session registration question about dealing with drop-out and drop-in

  #1372 opened 6 months ago by smbaca
  2

• Input Array Dimension for concatenation size error

  #1364 opened 7 months ago by kg3354
  12

• linux run result file not readable in windows gui

  #1360 opened 7 months ago by lsookie
  5

• caiman manager install fails

  #1369 opened 6 months ago by smbaca
  5

• Question/issue with register_multisession

  #1368 opened 6 months ago by JohnStout
  1

• bas_nonneg=False when p=0

  #1361 opened 7 months ago by wienecke
  0

• Breaking: Upstream tensorflow 2.16 breaks caiman

  #1355 opened 7 months ago by pgunn
  3

• pip install -e is broken

  #1356 opened 7 months ago by pgunn
  4

• Kernel dying during motion correction

  #1338 opened 7 months ago by Mraymon5
  19

• map_async causing issue when doing CNMF using ipyparallel

  #1348 opened 8 months ago by ethanbb
  5

• RTD is broken

  #1344 opened 8 months ago by pgunn
  4

• typo of os.environment

  #1345 opened 8 months ago by rob-the-bot
  0

• __pycache__ in caiman_data?

  #1340 opened 8 months ago by pgunn
  3

• Obsolete dependency python-spams

  #1339 opened 8 months ago by pgunn
  3

• Matlab support broken due to changes in scipy

  #1336 opened 8 months ago by pgunn
  9

• CNN model cannot be loaded with latest `keras` and `tensorflow`

  #1332 opened 9 months ago by kushalkolar
  10

• The error "TypeError: init() got an unexpected keyword argument 'normalize'" occurred in the line "cnm2 = cnm.refit(images, dview=dview)" in the demo_pipeline.

  #1333 opened 9 months ago by lsookie
  3

• Back to older version of Caiman

  #1324 opened 9 months ago by zhouyi0812
  1

• new sbx tests have issues on windows

  #1319 opened 9 months ago by pgunn
  8