Pinned Repositories
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
caiman
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
continuous_time_ca_sampler
The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underlying spike in continuous time.
deepcad
DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning
monogenic
MATLAB/Octave code for calculating the monogenic signal, local phase, feature symmetry/asymmetry and phase congruency
ROI_detect
Automatic ROI Detection
SPARC
SPARC paper analysis code
spgl1
A solver for large-scale sparse reconstruction
wienecke's Repositories
wienecke/caiman
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
wienecke/deepcad
DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning
wienecke/monogenic
MATLAB/Octave code for calculating the monogenic signal, local phase, feature symmetry/asymmetry and phase congruency
wienecke/SPARC
SPARC paper analysis code
wienecke/ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
wienecke/continuous_time_ca_sampler
The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underlying spike in continuous time.
wienecke/spgl1
A solver for large-scale sparse reconstruction
wienecke/ROI_detect
Automatic ROI Detection