Pinned Repositories
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
cufinufft
Nonuniform fast Fourier transforms of types 1 and 2, in 1D, 2D, and 3D, on the GPU
deepblast
Neural Networks for Protein Sequence Alignment
DeepFRI
Deep functional residue identification
finufft
Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3
FMM3D
Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine.
jax-finufft
JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library
nemos
NEural MOdelS, a statistical modeling framework for neuroscience.
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
Flatiron Institute's Repositories
flatironinstitute/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
flatironinstitute/finufft
Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3
flatironinstitute/nemos
NEural MOdelS, a statistical modeling framework for neuroscience.
flatironinstitute/jax-finufft
JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library
flatironinstitute/neurosift
Browser-based NWB visualization and DANDI exploration
flatironinstitute/stan-playground
Run Stan models in the browser
flatironinstitute/nixpack
nix+spack = nixpack (spanix?)
flatironinstitute/disBatch
Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.
flatironinstitute/nifty-ls
A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!
flatironinstitute/slurm-prometheus-exporter
Prometheus exporter for slurm job/node data
flatironinstitute/figurl
Shareable, interactive scientific figures in the cloud
flatironinstitute/walnuts
Within-orbit Adaptive Leapfrog No-U-Turn Sampler
flatironinstitute/baobzi
An adaptive fast function approximator based on tree search
flatironinstitute/clair
Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ
flatironinstitute/pytorch-finufft
Pytorch wrappers for the FINUFFT library
flatironinstitute/ManifoldEM
Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data
flatironinstitute/ccq-software-build
CCQ software build scripts
flatironinstitute/cryoSBI
flatironinstitute/adapol
Adaptive Pole Fitting for Quantum Many-Body Physics
flatironinstitute/flathub
A simple elasticsearch frontend for serving astrophysical simulation catalog data
flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1
The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge
flatironinstitute/CryoLike
flatironinstitute/dmk
A Dual-space Multilevel Kernel-splitting (DMK) Framework for Discrete and Continuous Convolution
flatironinstitute/figpack
A Python package for creating shareable, interactive, browser-based visualizations
flatironinstitute/fi-slurm-utils
Command-line utilities for Slurm HPC clusters
flatironinstitute/cephdu
A ncdu-like TUI for the Ceph File System, using xattrs instead of crawling
flatironinstitute/spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
flatironinstitute/c2py
Clair/c2py low level library
flatironinstitute/neuroRSE
Website for CCN's neuroRSE group
flatironinstitute/aLENS_analysis
Postprocessing & analysis scripts for aLENS data