alphafold
There are 49 repositories under alphafold topic.
pachterlab/gget
🧬 gget enables efficient querying of genomic reference databases
kyegomez/AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
Urinx/alphafold_pytorch
An implementation of the DeepMind's AlphaFold based on PyTorch for research
dptech-corp/Uni-Fold
An open-source platform for developing protein models beyond AlphaFold.
Zuricho/ParallelFold
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
kuixu/alphafold
Install alphafold on the local machine, get out of docker.
ml4bio/Dense-Homolog-Retrieval
Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
cbalbin-bio/pymol-color-alphafold
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
twoXes/awesome-structural-bioinformatics
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
elttaes/Revisiting-PLMs
Exploring Evolution-aware & free protein language models as protein function predictors
CDDLeiden/PCMol
Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
prehensilecode/alphafold_singularity
Singularity recipe for AlphaFold
wells-wood-research/alphafold2-multiprocessing
Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
AspirinCode/awesome-BioMolFold
RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
Coda-Research-Group/AlphaFind
AlphaFind: Discover structure similarity across the entire known proteome
garywei944/FMol
A simplified drug discovery pipeline -- generating SMILE molecular with AlphaSMILES, predicting protein structure with AlphaFold, and checking the druggability with fpocket/Amber.
johnnytam100/AlphaCutter
This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
refresh-bio/protestar
Protein Structure Archiver
johnnytam100/awesome-protein-design
A curated list of awesome protein design research, software and resources.
Orpowell/alphafold-analyser
A tool to visualise the results of AlphaFold2 and inspect the quality of structural predictions
wudangt/awesome-molecular-modeling-and-drug-discovery
A curated list of awesome Molecular Modeling And Drug Discovery 🔥
Bio2Byte/public_notebooks
Repository of Jupyter Notebooks created by the Bio2Byte group
sami-chaaban/alphascreen
Screen interactions with AlphaFold-Multimer
wangleiofficial/FAPEloss
alphafold FAPE loss
huiwenke/MineProt
Stand-alone server for structural proteome curation
Rishit-dagli/Invariant-Attention
An implementation of Invariant Point Attention from Alphafold 2
branchialspace/foldbender
protein graph representation
MiklosKralik/AlphaDock
Examines ligand interactions with predicted protein structures
Charmve/AlphaFold-baseline
This package provides an basic implementation of the contact prediction network used in AlphaFold 1 for beginner, associated model weights and CASP13 dataset as used for CASP13 (2018) and published in Nature
Attornado/protein-representation-learning
Protein representation learning using graph neural networks and Alphafold generated 3D structures.
jhrcook/proof-of-concept-alphafold
A proof-of-concept for using AlphaFold with new amino acid sequences (this may change to a full project in the future).
sami-chaaban/Colabfold
Colabfold setup and scripts
mvictoriabuss/Protein_Structure_Prediction
Repository with scripts and data generated during my internship at Institut Pasteur of Paris
rvhonorato/alphafold-hpc-wrapper
AlphaFold-wrapper for small HPC
shivendrra/enigma2
dna protein prediction using transformer. second version of engima-1.5b