bisulfite-sequencing
There are 27 repositories under bisulfite-sequencing topic.
maxplanck-ie/snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
nf-core/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
RWilton/Arioc
Arioc: GPU-accelerated DNA short-read alignment
kdkorthauer/dmrseq
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
BIMSBbioinfo/pigx
Pipelines in genomics
NuttyLogic/BSBolt
BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
aryeelab/bisulfite-seq-tools
Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).
hhg7/defiant
Differential methylation: Easy, Fast, Identification and ANnoTation
smithlabcode/abismal
Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
tadKeys/tabsat
Targeted Amplicon Bisulfite Sequencing Analysis Tool
sing-group/bicycle
bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis
christacaggiano/ENCODE_WGBS
a SGE, python, implementation of the ENCODE consortium whole genome bisulfite sequencing pipeline.
seb-mueller/snakemake-bisulfite
Pipeline for BS-Seq data based on snakemake
supermaxiste/ARPEGGIO
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
BGI-SZ/BSVF
Bisulfite Sequencing Virus integration Finder
AlexanderSimWS/AutomatedBisulfiteAnalysis
A simple python script to find the amount of methylation after bisulfites sequencing from .fasta files
Aryan092/Advanced-Data-Analyisis-Project
Analyze Whole Genome Bi-Sulfite Sequencing for Grape evolution in response to grafting
lancelothk/BSPAT
bisulfite sequencing pattern analysis tool
stephaniehicks/FlowSorted.Blood.WGBS.BLUEPRINT
A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
UDC-GAC/PARamrfinder
PARamrfinder is a high performance parallel tool to predict allele-specific DNA methylation (ASM) in mammals in the absence of SNP data.
lancelothk/ASM-Detector
Tools to analyse allele-specific methylation using bisulfite sequencing data
littleblackfish/BWASP
Bisulfite-seq data Workflow Automation Software and Protocols
VeronicaNoe/epiTree
Environmental and genealogical signals on DNA methylation in a widespread apomictic dandelion lineage
vonMeyennLab/nf_methylseq
A Nextflow pipeline to align and quantify Methylation (Bisulfite) sequencing data.
wegnerce/smk_emseq
Snakemake workflow for the processing of EMseq data
andrewdavidsmith/mxe
Methylome transfer engine (mxe)
YogiOnBioinformatics/The-Epigenetic-Landscape-of-PTSD
Lecture given in University of Pittsburgh course Genomics (BIOSC 1250) related to the epigenetic-basis for PTSD, how methylation of cytosines is detected and how epigenetic modifications of PTSD are hereditary.