RWilton/Arioc

Issues

• Potentially incorrect configuration values in documentation

  #36 opened 2 months ago by kennyworkman
  6

• Disabling softclipping

  #34 opened 4 months ago by jarrettrios
  4

• Unable to encode very short reference sequences.

  #33 opened 6 months ago by jarrettrios
  9

• AriocE/baseEncode.cpp 1263: buffer capacity exceeded

  #35 opened 5 months ago by jarrettrios
  3

• Arioc underestimating CpG methylation

  #32 opened a year ago by jpadesousa
  6

• Erroneous characters generated in Sam

  #31 opened a year ago by ZexuanZhao
  8

• AriocP hangs when aligning WGBS data

  #30 opened 2 years ago by RWilton
  12

• Issues encoding hg38 with AriocE

  #29 opened 2 years ago by aedera
  4

• Error when running AriocP

  #28 opened 2 years ago by wabrashear
  2

• Please provide an example for the creation of a cfg file from a fasta containing multiple sequences with AriocE

  #27 opened 2 years ago by claus-h-g
  3

• AriocP later than AriocP v1.50.3040.21310 (release) +2021-11-06T22:04:41 segfaults when run in Docker

  #26 opened 3 years ago by karlkashofer
  2

• XA Tag

  #25 opened 3 years ago by karlkashofer
  1

• Append fastq comment to SAM output like bwa-mem -C option

  #21 opened 3 years ago by karlkashofer
  3

• Suppress @SQ metadata header for aggregated FASTA file

  #23 opened 3 years ago by RWilton
  10

• Correct way to encode hg38 ?

  #20 opened 3 years ago by karlkashofer
  6

• Mapping accuracy ?

  #19 opened 3 years ago by karlkashofer
  4

• Allow named pipes as input to AriocE

  #18 opened 3 years ago by karlkashofer
  8

• pthread_mutex_unlock returned 22 for AriocE

  #17 opened 4 years ago by a7032018
  14

• Problem with calling methylation marks from AriocP Post aligned sam files

  #16 opened 4 years ago by RajneeshSrivastava
  1

• Does Arioc deal with Fastq.gz files?

  #15 opened 4 years ago by RajneeshSrivastava
  1

• tuning alignment soft-clipping for variant recall

  #11 opened 4 years ago by mdkeehan
  2

• Memory usage requirements for large genomes

  #14 opened 4 years ago by andreaswallberg
  3

• Please check indel normalisation works appropriately for reverse orientation reads.

  #10 opened 4 years ago by mdkeehan
  5

• Source code?

  #12 opened 4 years ago by r-barnes
  3

• Hard-coded architecture

  #13 opened 4 years ago by r-barnes
  1

• Cuda pinned memory error when switching to 2 GPUs

  #8 opened 5 years ago by boconnell89
  5

• Allocation error

  #7 opened 6 years ago by standage
  12

• Consider putting source code under version control

  #5 opened 6 years ago by standage
  4

• Error with encoding reference genome

  #4 opened 6 years ago by standage
  11

• Makefile in linux source for powerpc machine could not work correctly

  #6 opened 6 years ago by songdongmei
  1

• HOWTO?

  #3 opened 6 years ago by dakami
  1

• No Source Code Available?

  #1 opened 9 years ago by bpfeffer
  3

• Issue while running AriocU and AriocP

  #2 opened 9 years ago by xerien
  8