blastn
There are 34 repositories under blastn topic.
OpenHero/gblastn
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
drostlab/metablastr
Seamless Integration of BLAST Sequence Searches in R
ropensci/phylotaR
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
laurentnoe/yass
genomic alignment similarity search tool
Azure/azure-hpc
Microsoft Azure HPC & Big Compute
billzt/PrimerServer
Obsolete!! Begin to turn to PrimerServer2
vestalisvirginis/synphage
Pipeline to create phage genome synteny graphics from genbank files
jaswindersingh2/RNAcmap
A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis
NuruddinKhoiry/blastMining
Mining NCBI BLAST output
Reconfigurable-Computing-CalPoly-Pomona/Reconfigurable-BLAST-N
The Blastn (Basic Local Alignment Search Tool for Nucleotides) algorithm with Smith-Waterman scoring implemented for FPGAs
mkandziora/PhylUp
PhylUp - a python package to automatically generate alignments (or update alignments and phylogenies) using local sequences or a local Genbank database while controlling for the number of sequences per OTU.
asadprodhan/A-beginner-s-guide-to-Bioinformatics
A beginner’s guide to Bioinformatics
brianSalk/blast_practice_data
data used in the youtube video
TuanjieNew/Indel-Finder
A program used to find indels on target gene edited by CRISPR/Cas9
BTalamantesBecerra/omicR
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.
BTalamantesBecerra/omicR_for_RStudio
omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use reference genomes from NCBI, or any other genetic sequence that you would like to use as reference.
JacobLondon/Blastn
The Blastn (Basic Local Alignment Search Tool for Nucleotides) algorithm with Smith-Waterman scoring implemented for FPGAs
pranavkhurana/Seabuck-thorn
This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.
asadprodhan/blastn
How to automatically download blastn database, run blastn, and extract blastn hit sequences?
iruziky/Alinhamento-com-Blast
Automações para realizar alinhamentos em grande escala com o Blast
kokinide/PARSID
Parser of BLAST results
lynnlangit/blastn
Demo of blastn tool for bioinformatics
mdcjansen/DBA
DNA barcoding analysis pipeline
ohnosequences/blast-api
A typesafe Scala BLAST API
vizkidd/QuickBLAST
BLAST without Sys.Call()
hsmurali/Transitive_Annotation
The impact of transitive annotation on the training of taxonomic classifiers
ifremer-bioinformatics/BLAST-PLAST-bench
Scripts to run benchmarks of BLAST and PLAST on a supercomputer
meeranhussain/BLAST_GNU_parallel
BLAST searches in parallel using GNU Parallel
petersm3/filterfastq
Filter out sequences in FASTQ files that match a reference genome
TC-Hewitt/Misc_NGS
various tools that help with deep sequencing analysis
asadprodhan/Gene_seq_extraction_from_multiple_genomes
How do I automate extracting multiple gene sequences from multiple genomes?
georgiesamaha/ProbeRemap
Map SNP positions to a supplied reference assembly using BLAST. Filter results for best hit. Output in plink format.
gloshiii234/bola
This repository conatins bash scripts for performing a blast search using a custom database of BOLA-DRB3 alleles that were sequenced using Sanger sequencing.
lynnlangit/blastn-jupyter-docker
Container for blastn and Jupyter notebook