cancer-genome-atlas
There are 12 repositories under cancer-genome-atlas topic.
PoisonAlien/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
getzlab/deTiN
DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
JWellsBio/Chemosensitivity
Predicting chemosensitivity using gene expression
marislab/pdx-classification
Applying Machine Learning Ras, NF1, and TP53 Classifiers to PDX model gene expression
MI2DataLab/KRAB_ZNF
KRAB-ZNF explorer - expression of KRAB-ZNF- transcription factors in The Cancer Genome Atlas study
haranrk/cancer-data-analysis-jfcr39
Cancer data analysis on the JFCR39 dataset
aabusheikh/Python_GDC_Correlation
A Python script to create scatter plots from files containing integrated GDC RNA expression data.
aabusheikh/Python_GDC_DL
Python script to download files from the GDC server
aabusheikh/Python_GDC_Heatmap
Python script to create a heatmap based on correlations in GDC expression data of PTEN with other genes.
aabusheikh/Python_GDC_Integration
Python script to integrate files downloaded from the GDC server and normalized.