getzlab/deTiN

Issues

• aSCNA segmentation file from Canvas

  #38 opened 2 years ago by jonStewMitch
  0

• Error message

  #37 opened 2 years ago by cyanophage
  0

• error message "can't set using a multi-index" when running example data

  #34 opened 3 years ago by jp3117
  2

• Easy Question: Is "alt_allele_in_normal" from Mutect1 is similar to "normal artifact" in Mutect2(GATK4)

  #35 opened 3 years ago by npatel-ah
  2

• AllelicCNV input files

  #13 opened 6 years ago by erleholgersen
  4

• gatk except AllelicCNV

  #33 opened 3 years ago by jeongmeani
  0

• Validation data on SRA

  #29 opened 4 years ago by probalica19
  2

• ExAc pickle file for hg38

  #14 opened 6 years ago by erleholgersen
  12

• error while generating ExAC file

  #30 opened 4 years ago by MariusGheorghe
  1

• Running with SSNV data only

  #27 opened 4 years ago by jonMitchGEL
  2

• Fails without INDEL data

  #25 opened 4 years ago by lDesiree
  4

• n_probs argument requirement in aSCNA segmentation file:

  #26 opened 4 years ago by heyudou
  1

• Does deTiN support to accept SSNV and SCNA data from callers other than Mutect1 and AllelicCNV?

  #24 opened 5 years ago by lindaxiang
  4

• TypeError: object of type 'numpy.float64' has no len(): len(self.ascna_based_model.centroids)

  #23 opened 5 years ago by lelagina-broad
  1

• AttributeError: 'list' object has no attribute 'isnull'

  #22 opened 5 years ago by nukaemon
  4

• How can we get the value "tau" in aSCNA segmentation file?

  #21 opened 5 years ago by b-niu
  2

• Missing required input fields

  #15 opened 6 years ago by erleholgersen
  3

• Which version of GATK for CallCNLoHAndSplits

  #20 opened 5 years ago
  5

• dbsnp/cosmic.vcf

  #19 opened 5 years ago
  1

• Results

  #18 opened 6 years ago by MagdalenaZZ
  2

• Description of outputs

  #17 opened 6 years ago by MagdalenaZZ
  2

• generating inputs with GATK4

  #16 opened 6 years ago by sraorao
  4

• which version of GATK should i use?

  #12 opened 6 years ago by haoziyeung
  2