cancer-variants

There are 9 repositories under cancer-variants topic.

seandavi/awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
295 33 269
sigven/pcgr
Personal Cancer Genome Reporter (PCGR)
Language:R254 24 14848
joiningdata/lollipops
Lollipop-style mutation diagrams for annotating genetic variations.
Language:Go186 18 7370
rhshah/IMPACT-Pipeline
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
Language:Perl55 10 19
getzlab/deTiN
DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
Language:Jupyter Notebook49 6 2421
enginBozkurt/Lymphoma-Cancer-Classification
A PyTorch implementation for differentiating between different types of lymphoma cancer
Language:Jupyter Notebook8 2 02
neksa/mutagene
Python library and package for mutational analysis
Language:Jupyter Notebook3 5 373
rushabh-wadkar/Personalized-Cancer-Diagnosis-ML-CaseStudy
Classify the given genetic variations/mutations based on evidence from text-based clinical literature.
Language:HTML2 4 00
aleighbrown/background_mutability
Code for figure generation and analysis in Finding driver mutations in cancer: Elucidating the role of background mutational processes https://doi.org/10.1371/journal.pcbi.1006981
Language:R0 1 00