neksa/mutagene

Issues

• KeyError: 'GCTGA'

  #64 opened 4 years ago by yunhuip
  4

• Ranking

  #63 opened 4 years ago by anna-panchenko
  1

• Motif search

  #62 opened 4 years ago by anna-panchenko
  0

• 'Unexpected value of transcript_strand in MAF file'

  #61 opened 4 years ago by yunhuip
  0

• Do not show VCF MAF format option in rank module

  #51 opened 4 years ago by neksa
  1

• non-informative error message

  #54 opened 4 years ago by anna-panchenko
  3

• Ranking, can not override profile

  #56 opened 4 years ago by anna-panchenko
  3

• Redesign rank subpackage

  #50 opened 4 years ago by neksa
  1

• provides no list of cohorts

  #55 opened 4 years ago by anna-panchenko
  1

• Package documentation

  #49 opened 4 years ago by neksa
  0

• Gene transcripts

  #48 opened 4 years ago by anna-panchenko
  0

• Issues with motif_doc.rst

  #44 opened 4 years ago by shandy79
  3

• Explore CircleCI integration

  #29 opened 4 years ago by shandy79
  1

• Create log file with input parameters

  #45 opened 4 years ago by neksa
  0

• genome requirement

  #2 opened 4 years ago by carolinecunningham
  2

• different output with and w/o bootstrap

  #35 opened 4 years ago by anna-panchenko
  0

• Standard output

  #27 opened 4 years ago by fhernandezl
  0

• mutagene signature reporting

  #15 opened 4 years ago by carolinecunningham
  0

• ambiguous error message

  #38 opened 4 years ago by anna-panchenko
  3

• mutagene signature identify

  #34 opened 4 years ago by anna-panchenko
  0

• signature identify documentation and help

  #36 opened 4 years ago by anna-panchenko
  1

• web server and package

  #39 opened 4 years ago by anna-panchenko
  1

• motif search

  #33 opened 4 years ago by anna-panchenko
  1

• webserver error

  #40 opened 4 years ago by anna-panchenko
  0

• --help for "signature identify"

  #37 opened 4 years ago by anna-panchenko
  0

• pvalue

  #14 opened 5 years ago by carolinecunningham
  0

• motif search command line

  #31 opened 5 years ago by anna-panchenko
  0

• arguments in motif search

  #32 opened 5 years ago by anna-panchenko
  1

• Genome assembly does not match

  #28 opened 5 years ago by anna-panchenko
  0

• VCF processing

  #17 opened 5 years ago by carolinecunningham
  0

• optional args

  #3 opened 5 years ago by carolinecunningham
  0

• genome list

  #12 opened 5 years ago by carolinecunningham
  0

• rounding of mutations high estimate

  #7 opened 5 years ago by carolinecunningham
  2

• motif str requirement in cli

  #8 opened 5 years ago by carolinecunningham
  3

• generating output pdf

  #5 opened 5 years ago by carolinecunningham
  3

• MAF parsing error

  #1 opened 5 years ago by neksa
  1

• cohort documentation

  #4 opened 5 years ago by carolinecunningham
  0