chipseq
There are 22 repositories under chipseq topic.
genome/bfx-workshop
A course on genomics and bioinformatics from WU
ncbi/pm4ngs
Project Manager for NGS data analysis
BIMSBbioinfo/pigx
Pipelines in genomics
BIMSBbioinfo/pigx_chipseq
Pipeline for Analysis of ChIP-Seq data
boulderrinnlab/CLASS_2020
A pre-cooked version of our course
TheFraserLab/cisVar
cisVar scripts.
cparsania/parcutils
An R package containing bioinformatics utility functions. Mostly related to RNAseq data analysis
FrietzeLabUVM/TAP
Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.
lakhanp1/chipmine
R package for exploratory analysis of ChIPseq data
lakhanp1/omics_utils
util scripts for various omics data analysis
mireia-bioinfo/workshop_bioinfo_ChIPseq
🖥️🧬 Materials for a Bioinformatics Workshop on ChIP-seq analysis, introduction to R and GenomicRanges.
dogmaticcentral/progesterone
Which ESR1 and PGR binding sites are functional?
lakhanp1/markPeaks
Genomic regions (e.g ChIPseq peaks) annotation with TxDB object
pd321/chipseq
A snakemake based workflow for ChIPSeq data analysis
pipaber/Multi-omics
This is a repository to show my experience analyzing different kinds of Omics data.
sebastian-gregoricchio/SPACCa
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
LieberInstitute/dbFinder
dbFinder code
MahShaaban/chromatin_segmentation_r
Package demo slides, "Chromatin Segmentation Analysis in R"
MahShaaban/segmenterNote
A technical note to describe the segmenter package
MahShaaban/targetFlow
target: An R Package to Predict Combined Function of Transcription Factors (workflow article)