pd321/chipseq

Issues

• Move over to new way of organizing files as per snakemake recommended structure

  #25 opened 2 years ago by pd321
  0

• Change the output post blacklist filtering to narrowpeak format

  #18 opened 3 years ago by pd321
  1

• Update the multiqc version

  #13 opened 3 years ago by pd321
  1

• Version update required: Trimgalore

  #8 opened 3 years ago by pd321
  0

• CRITICAL: Add missing config for bowtie2

  #23 opened 3 years ago by pd321
  1

• Migrate to github actions

  #21 opened 3 years ago by pd321
  0

• Let bw files be created by a seperate tool independet of MACS2

  #20 opened 3 years ago by pd321
  1

• Macs2: Run differently for PE and SE datasets

  #19 opened 3 years ago by pd321
  0

• Add support for post trimming fastqc

  #17 opened 4 years ago by pd321
  0

• When run as default with SE files the following error is observed

  #16 opened 4 years ago by pd321
  0

• Change picard syntax as per new style of giving arguments

  #14 opened 4 years ago by pd321
  0

• Add bwtools and r based PCA

  #12 opened 4 years ago by pd321
  0

• Add checklists for pre and post launch

  #11 opened 4 years ago by pd321
  0

• Macs2: Add support for broad peak calling

  #10 opened 4 years ago by pd321
  0

• Multiqc: Runs out of order with only SE or PE dataset

  #9 opened 4 years ago by pd321
  0

• Fix se output plot pattern

  #5 opened 5 years ago by pd321
  0

• Handle trim galore threads

  #4 opened 5 years ago by pd321
  0

• Get pe/se status directly when creating metadata.tsv

  #1 opened 5 years ago by pd321
  0