common-workflow-language

There are 68 repositories under common-workflow-language topic.

common-workflow-language/common-workflow-language
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
Language:Common Workflow Language1.5k 101 572196
DataBiosphere/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Language:Python920 54 3.1k244
common-workflow-language/cwltool
Common Workflow Language reference implementation
Language:Python357 38 820237
rabix/composer
Visual and code editor for Common Workflow Language
Language:TypeScript309 22 9773
Barski-lab/cwl-airflow
Python package to extend Airflow functionality with CWL1.1 support
Language:Python192 6 6032
rabix/bunny
[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
Language:Common Workflow Language75 22 23528
rabix/benten
A language server for Common Workflow Language
Language:Python66 7 1149
rabix/cwl-ts
Typescript data model for Common Workflow Language
Language:TypeScript51 11 2819
common-workflow-language/cwlviewer
A web application to view and share Common Workflow Language workflows
Language:Java46 30 16129
sbg/sevenbridges-python
SevenBridges Python Api bindings
Language:Python46 35 10028
PMCC-BioinformaticsCore/janis
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
Language:Python44 9 2813
common-workflow-language/user_guide
The CWL v1.0 - v1.2 user guide
Language:Common Workflow Language43 27 14665
common-workflow-language/cwl-utils
Python utilities for CWL
Language:Python40 30 6221
sbg/sevenbridges-r
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
Language:R36 16 8014
workflux/workflUX
An open-source, cloud-ready web application for simplified deployment of big data workflows.
Language:JavaScript33 6 729
crim-ca/weaver
Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package
Language:Python28 7 3166
EBI-Metagenomics/pipeline-v5
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Language:HTML24 6 1421
otiai10/cwl.go
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
Language:Go22 3 17
sbg/sevenbridges-cwl
Seven Bridges Python library for programatic generation of CWL workflows.
Language:Python20 30 53
common-workflow-language/cwltest
Framework for testing CWL tools and workflows
Language:Python19 40 4218
otiai10/yacle
Yet Another CWL Engine by Golang
Language:Go18 2 33
common-workflow-lab/ipython2cwl
IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
Language:Python17 5 57
common-workflow-language/cwl-website
www.commonwl.org
Language:JavaScript10 39 7121
rabix/cwl-format
A very opinionated code formatter for CWL
Language:Common Workflow Language10 5 154
tom-tan/ep3
A workflow engine for CWL that aims to have a pluggable architecture
Language:Ruby10 2 13
kclhi/phenoflow
Standardise and share computable disease definitions
Language:JavaScript9 5 08
fairagro/m4.4_sciwin_client
🦀 SciWIn Client: Reproducible computational Workflows made easy!
Language:Rust8 3 1043
sbg/tidycwl
Tidy Common Workflow Language Tools and Workflows
Language:Common Workflow Language8 3 12
suecharo/genpei
An implementation of GA4GH Workflow Execution Service Standard as a microservice.
Language:Python8 1 01
tom-tan/cwl-mode
CWL mode for Emacs
Language:Emacs Lisp8 4 11
tom-tan/cwl-template-for-vscode
A template to write CWL documents with VSCode with remote container extension
Language:Dockerfile8 1 13
EBI-Metagenomics/workflow-is-cwl
This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts
Language:HTML7 5 157
sbg/bco-app
BCO App by Seven Bridges
Language:R7 3 84
tom-tan/cwl-inspector
This tool provides a handy way to inspect properties of tools or workflows written in Common Workflow Language
Language:Ruby7 2 12
msk-access/cwl-commandlinetools
Central location for CWL CommandLineTools
Language:Common Workflow Language5 1 330
onnovalkering/cwl
The Common Workflow Language (CWL) object model for Rust.
Language:Common Workflow Language5 3 11

common-workflow-language

common-workflow-language/common-workflow-language

DataBiosphere/toil

common-workflow-language/cwltool

rabix/composer

Barski-lab/cwl-airflow

rabix/bunny

rabix/benten

rabix/cwl-ts

common-workflow-language/cwlviewer

sbg/sevenbridges-python

PMCC-BioinformaticsCore/janis

common-workflow-language/user_guide

common-workflow-language/cwl-utils

sbg/sevenbridges-r

workflux/workflUX

crim-ca/weaver

EBI-Metagenomics/pipeline-v5

otiai10/cwl.go

sbg/sevenbridges-cwl

common-workflow-language/cwltest

otiai10/yacle

common-workflow-lab/ipython2cwl

common-workflow-language/cwl-website

rabix/cwl-format

tom-tan/ep3

kclhi/phenoflow

fairagro/m4.4_sciwin_client

sbg/tidycwl

suecharo/genpei

tom-tan/cwl-mode

tom-tan/cwl-template-for-vscode

EBI-Metagenomics/workflow-is-cwl

sbg/bco-app

tom-tan/cwl-inspector

msk-access/cwl-commandlinetools

onnovalkering/cwl