cytof

lmweber/cytometry-clustering-comparison

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

ParkerICI/premessa

R package for pre-processing of mass and flow cytometry data

LCSB-BioCore/GigaSOM.jl

Huge-scale, high-performance flow cytometry clustering in Julia

ParkerICI/panorama

R package for interactive visualization and analysis of single-cell data

casanova-lab/iMUBAC

Integration of multi-batch cytometry datasets

kevin931/CytofDR

A Python package for dimension reduction and evaluation workflows with CyTOF data.

TAPE-Lab/CyGNAL

Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.

wwu-mmll/gatenet

Official implementation of GateNet

kevin931/cytomulate

Accurate and Efficient Simulation of CyTOF data

AlexanderKononov/cytofBrowser

Analysis and visualisation single-cell proteomic data (CyTOF)

hylasD/tSpace

JimboMahoney/cytofclean

Fast auto-cleanup of CyTOF data

niaid/HDStIM

HDStIM: High Dimensional Stimulation Immune Mapping

JimboMahoney/CytobankGraphs

R Script for reading CyTOF or flow cytometry data (FCS) and generating plots like Cytobank

yannabraham/bodenmiller

Profilling of Peripheral Blood Mononuclear Cells using CyTOF

AlexanderKononov/cytofBrowserLite

Lite version of the tool to analyze and visualize CyTOF data (still under development)

desmchoy/BinaryClust

CyTOF data exploration and analysis pipeline using binary classification followed by clustering

dweth/mcsnac

Code for analysis of single cell signaling network kinetics from flow cytometry (CyTOF) datasets

JimboMahoney/7Zip-IMD-Batch

Created to help backup data from a CyTOF system

JimboMahoney/CytoBars

R script for summarising paramater / channel intensity from flow or mass cytometry data

JimboMahoney/CyTOF-PlotViewer

Plots log histograms of FCS files like CyTOF's PlotViewer program

reeves-lab/2020-Coxiella-Scientific-Reports

Analysis scripts for vaccination and challenge study published in Scientific Reports.

TAPE-Lab/OT-2_Code

Scripts to perform automated pipetting of (1) Barcode Production & Aliquoting and (2) a Robotic Extraction Protocol of Organoids

hamid-bolouri/superSOM

CyTOF sample gating using supervised Self Organizing Maps

hylasD/MATLAB_version_tSpace

JimboMahoney/Common-FCS-Channels

Opens two or more FCS files and creates new files that contain only the Channels common to all.

JimboMahoney/CyTOF-Template-Creator

Shiny interface to create CyTOF .tem files

JimboMahoney/FCS-Multidimensional-Scaling

Plots the MDS (Multi-dimensional scaling) of 3 or more FCS files.

kevin931/PyCytoData

A Python pipeline for CyTOF data analyses

molsysbio/RUCova

R library to remove unwanted covariance from mass cytometry data

GenomicsNX/cytoflow

A Python toolbox for quantitative, reproducible flow cytometry analysis

JimboMahoney/FCS-Events

Very fast method to read number of events from some / all FCS files in a directory

JimboMahoney/FlowCytSpeed

R Script to plot the average event rate in flow or mass cytometry (FCS) files

JimboMahoney/Isotope-Abundance

A handy spreadsheet for looking up elemental isotopes by symbol or mass.

YogiOnBioinformatics/B-Cells-In-Atherosclerosis

Work done during rotation with Coleen McNamara & Stefan Bekiranov in UVA BIMS PhD program