daphnia

There are 7 repositories under daphnia topic.

  • adc0032/dpulicaria_genomics

    This repository contains all scripts used to perform reference-guided genomic assembly from paired end sequence reads and screen for contaminants as was done in Clark et al. 2021. These scripts are designed to assemble the genomes for two strains of Daphnia pulicaria using Daphnia pulex (PA42) as a reference. This repository presents a simplified workflow/pipeline to run these analyses on a supercomputer and are separated into two parts, reference-guided genomic assembly and contamination screening.

    Language:Shell1200

  • connor122721/CNV-Analysis

    Quantify structural variants in clonal Daphnia genomes

    Language:R0100
  • GeneFamilyEvolution

    connor122721/GeneFamilyEvolution

    Daphnia gene family evolution.

    Language:R00

  • connor122721/geva_daphnia

    Estimate age of single-nucleotide polymorphisms from genomes

    Language:Shell0100

  • connor122721/methyl_farnesoate_reproduction

    Effects of methyl farnesoate on male production in Daphnia pulex clones

    Language:R0100

  • connor122721/SharedPolymorphismsDaphnia

    Evolutionary genomics of shared mutations within the Daphnia pulex species complex.

    Language:R0100

  • connor122721/obtusa

    Nextflow pipeline for de novo hifi genome assembly for Daphnia obtusa

    Language:Nextflow10