daphnia
There are 7 repositories under daphnia topic.
adc0032/dpulicaria_genomics
This repository contains all scripts used to perform reference-guided genomic assembly from paired end sequence reads and screen for contaminants as was done in Clark et al. 2021. These scripts are designed to assemble the genomes for two strains of Daphnia pulicaria using Daphnia pulex (PA42) as a reference. This repository presents a simplified workflow/pipeline to run these analyses on a supercomputer and are separated into two parts, reference-guided genomic assembly and contamination screening.
connor122721/CNV-Analysis
Quantify structural variants in clonal Daphnia genomes
connor122721/GeneFamilyEvolution
Daphnia gene family evolution.
connor122721/geva_daphnia
Estimate age of single-nucleotide polymorphisms from genomes
connor122721/methyl_farnesoate_reproduction
Effects of methyl farnesoate on male production in Daphnia pulex clones
connor122721/SharedPolymorphismsDaphnia
Evolutionary genomics of shared mutations within the Daphnia pulex species complex.
connor122721/obtusa
Nextflow pipeline for de novo hifi genome assembly for Daphnia obtusa