edger
There are 29 repositories under edger topic.
stemangiola/tidybulk
Brings bulk and pseudobulk transcriptomics to the tidyverse
PF2-pasteur-fr/SARTools
Statistical Analysis of RNA-Seq Tools
amarinderthind/RNA-seq-tutorial-for-gene-differential-expression-analysis
This RNAseq data analysis tutorial is created for educational purpose
eonurk/RNA-seq-differential-analyses-guideline
A quick recap of widely used differential analyses methods in R for RNA-seq experiments
peterlipan/DE_rpy2
Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2
leekgroup/regionReport
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
charles-plessy/tutorial
Various tutorials on how to analyse transcriptomic data.
stemangiola/ppcseq
Probabilistic outlier identification for bulk RNA sequencing data
EmoryIntegratedComputationalCore/Methods
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
jessmhoehner/Methods
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
aprezvykh/bioinformatics
some scripts to process transcriptomics and Chip-seq data
hernanmd/edgeR.EnhancedVolcanoPlot
Enhanced volcano plot using edgeR data
PF2-pasteur-fr/SARTools-Galaxy
Galaxy wrappers for SARTools (Statistical Analysis of RNA-Seq Tools)
pwilmart/Sea_lion_urine_SpC
Sea lion urine comparison with spectral counting.
snbogan/Sp_RRBS_ATAC
Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins
aobermayer4/CPTAC_LUAD_HaploAnalysis
Methods overview with scripts looking at mtDNA and haplogroup association with CPTAC LUAD study.
GioFis/GioFis
Config files for my GitHub profile.
HannahJeffery1/HannahJeffery1
Personalized, annotated code for anyone working with RNA-seq data.
Hemangini09/RNA-seq-data-analysis-with-edgeR-
Perform RNA-seq data analysis with edgeR package of bioconductor
lasamo/epimed_internship
Rstudio files created during my internship at IAB. Internship supervised by Florent Chuffart.
merlinis12/RNA-Seq-Data-Analysis-in-R
RNA-Seq Data Analysis in R: From Raw Counts to Differential Expression Analysis
NehaSontakk/RNA-sequencing-fastq-to-differential-gene-expression
RNA sequencing processing and analysis to find differential expression
SherineAwad/BulkRNASeq
Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.
UBC-iGEM/wheat_RNAseq_analysis
Transcriptome Analysis of Heat and Drought-Stressed Wheat
arashsm79/tasmanian-devil-gene-enrichment-analysis
The Tasmanian devil is endangered due to Devil Facial Tumour Disease (DFTD), a contagious cancer with no current treatment. Previous study has investigated the anticancer properties of Tasmanian devil cathelicidins. This report intends to reproduce the enrichment analysis results of the study and further analyze their data.
pwilmart/Smith_SpC_2018
A large-scale spectral counting data analysis using PAW pipeline, edgeR, R, and Jupyter notebooks
renatopuga/rnaseq-callvariants
RNASeq and Call Variants