Issues
- 5
normalisation on all groups or pairwise?
#108 opened by marwa38 - 2
prefiltering of low gene counts in deseq2 pipeline?
#106 opened by marwa38 - 1
- 2
Fold change calculation?
#104 opened by marwa38 - 4
[WARNING] Could not fetch resource figures
#105 opened by scauchi59 - 7
- 1
normalised count table (deseq2)?
#102 opened by marwa38 - 4
add column
#101 opened by lmanchon - 2
descriptionPlots error due to tabSERE/SERE code
#82 opened by SedaArat - 1
V vs M or M vs V comparsion?
#100 opened by marwa38 - 3
reporting a ggplot warning
#95 opened by marwa38 - 3
how to import rsem to use in SARTools?
#98 opened by marwa38 - 1
Scale for Y already present, adding another scale for y, which will replace the existing scale?
#99 opened by marwa38 - 1
- 0
min fold change for deseq2?
#96 opened by marwa38 - 5
Error in loadCountData - release 1.7.3
#79 opened by loraine-gueguen - 1
input .txt files error (non-numeric)
#94 opened by marwa38 - 6
More than one condRef in Deseq2
#92 opened by ankushs0128 - 2
LFC shrinkage
#90 opened by lmanchon - 1
p-value change with multiple condition
#89 opened by Flo5701 - 3
SarTools Cloud Version
#86 opened by MakeTheBrainHappy - 11
- 5
input files format
#87 opened by cdecraene - 1
Gene lenght corrected value
#80 opened by Bury-Mone - 2
writeReport.DESeq2 Command Error: pandoc document conversion failed with error 83
#81 opened by MakeTheBrainHappy - 5
Error in loadTargetFile
#78 opened by canulef3 - 1
plot labels by batch, not sample name, then rely on colour to determine specific sample (condition)
#74 opened by vmkalbskopf - 1
- 2
edgeR error “arguments imply differing number of rows: 2, 15, 1” after explorecounts
#75 opened by ACuriousScientist - 2
Option to set ggplot themes
#73 opened by vmkalbskopf - 4
Option to save figures as eps files that can be edited in programs like Inkscape and Illustrator
#72 opened by vmkalbskopf - 2
More flexible input formats
#61 opened by KField-Bucknell - 2
Adjust font size
#66 opened by vmkalbskopf - 8
2 time points and no other condition
#59 opened by vmkalbskopf - 2
Plot size figures
#64 opened by aditi-2017 - 1
Manual limits on MA plot and Volcano plot
#62 opened by KField-Bucknell - 3
install SARTools in RSTUDIO
#63 opened by SMORTAZA - 3
Overlapping labels in PCAplot
#51 opened by yifangt - 5
targetFile must be a character vector of length 1 specifying an accessible file?
#38 opened by mranjan1 - 2
- 2
- 2
- 3
update the conda repo?
#48 opened by scottdaniel - 5
Error in checkSlotAssignment (DESeq2)
#46 opened by nbargues - 1
getopt error: redundant short names
#42 opened by shekeb - 1
Figure image too large error
#39 opened by Imoteph - 4
adding the parameter parallel for DESeq pipeline
#37 opened by Imoteph - 3
RSEM file format
#33 opened by Cdk29 - 1
New normalization methods
#32 opened by bfoquet - 2