How could I obtain homoscedastic normalized counts from SARtools ?

[Bury-Mone]

Hello,
I would like to export the homoscedastic normalized counts obtained from SARtools to perform other multidimensional analysis. Could you please indicate to me how I can obtain them ?
I thank you a lot for this information.
Kind regards
Stéphanie (from Roscoff)

[hvaret]

Hi Stéphanie,
after having run the DESeq2 template script you can get the variance-stabilized counts using:
vsd <- getVarianceStabilizedData(out.DESeq2$dds)
Best,
Hugo

[Bury-Mone]

Dear Hugo, I thank you very much for your help. Have a nice day, Stéphanie.

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----- Mail original ----- De: "Hugo Varet" <notifications@github.com> À: "PF2-pasteur-fr/SARTools" <SARTools@noreply.github.com> Cc: "Bury-Mone" <stephanie.bury-mone@u-psud.fr>, "Author" <author@noreply.github.com> Envoyé: Lundi 17 Décembre 2018 14:14:17 Objet: Re: [PF2-pasteur-fr/SARTools] How could I obtain homoscedastic normalized counts from SARtools ? (#58) Hi Stéphanie, after having run the DESeq2 template script you can get the variance-stabilized counts using: vsd <- getVarianceStabilizedData(out.DESeq2$dds) Best, Hugo — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub , or mute the thread .