epidemics
There are 132 repositories under epidemics topic.
ryansmcgee/seirsplus
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
SORMAS-Foundation/SORMAS-Project
SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.
GiulioRossetti/ndlib
Network Diffusion Library - (for NetworkX and iGraph)
EpiModel/EpiModel
Mathematical Modeling of Infectious Disease Dynamics
CodeForPhilly/chime
COVID-19 Hospital Impact Model for Epidemics
safreita1/TIGER
Python toolbox to evaluate graph vulnerability and robustness (CIKM 2021)
benmaier/tacoma
Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.
imdevskp/covid_19_jhu_data_web_scrap_and_cleaning
This repository contains data and code used to get and clean data from https://github.com/CSSEGISandData/COVID-19 and https://www.worldometers.info/coronavirus/
covid19-model/simulator
Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022
jangevaare/Pathogen.jl
Simulation, visualization, and inference of individual level infectious disease models with Julia
seandavi/sars2pack
An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources
cognizant-ai-labs/covid-xprize
Open-source repository containing examples and documentation for the Cognizant XPRIZE Pandemic Response Challenge
metalcorebear/COVID-Agent-Based-Model
Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.
jstockwin/EpiEstimApp
Source code for the EpiEstim app.
pennsignals/bayes-chime
Bayesian fit to SEIR model. An extension to Penn Medicine's CHIME tool.
PetoLau/CoronaDash
COVID-19 spread shiny dashboard with a forecasting model, countries' trajectories graphs, and cluster analysis tools
jerr-it/SpreadSimulator
Epidemics simulation
lo-hfk/epyestim
Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers
wangxianghust/SIS-SIR-Simulation
Epidemic simulation models of complex network.
jtmatamalas/MMCAcovid19.jl
Microscopic Markov Chain Approach to model the spreading of COVID-19
MohamedHmini/D-PandiSIM
distributed pandemics simulator, uses the power of spark to generate huge bulks of contact-tracing data.
wcota/dynSIS-networkx
Networkx implementation of the SIS epidemic model for large and heterogeneous networks
americocunhajr/EPIDEMIC
EPIDEMIC is an easy-to-run educational toolkit for epidemiological analysis.
metawards/MetaWards
MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling
GiulioRossetti/ndlib-rest
Network Diffusion Library REST Service
junhua/EPIC
EPIC: a large collection of over 30 million epidemic-related tweets
nwlandry/hypercontagion
Library for epidemics on hypergraphs
ContentMine/FutureTDM
Materials of FutureTDM project
temp3rr0r/CellularAutomataEpidemicModels
Stochastic Cellular Automata epidemic models in Python with 2D simulations
wcota/dynSIS
Implementation of SIS epidemic model for large and heterogeneous networks using Fortran.
americocunhajr/COVID19RJ
Repositório da iniciativa COVID19: Observatório Fluminense, com dados, gráficos e relatórios sobre a evolução pandemia de COVID-19, com especial interesse no Estado do RJ.
edoardottt/COVID-19
Info/Data (global/italy) about COVID-19. PR welcome for other countries.
adbecker/tsiR
tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemics
FeiGSSS/NEDMP
Official PyTorch implementation of Neural Enhanced Dynamic Message Passing in AISTATS 2022
sibyl-team/sib
Sibilla
epiverse-trace/epi-training-kit
An e-learning strategy for training on analysis, modelling and response to outbreaks and epidemics in Latin-America and the Caribbean