eqtl
There are 46 repositories under eqtl topic.
boxiangliu/locuscomparer
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
heiniglab/scPower
Experimental design framework for scRNAseq population studies (eQTL and DE)
mancusolab/twas_sim
Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
limix/CellRegMap
CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq
single-cell-genetics/singlecell_neuroseq_paper
Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
sterding/BRAINcode
Script and pipeline for BRAINcode project
mikelove/mrlocus
Older repo for MRLocus. See new website for software usage guide:
single-cell-genetics/singlecell_endodiff_paper
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
mancusolab/sushie
Software to perform multi-ancestry SNP fine-mapping on molecular data
insilico/npdr
NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model
soedinglab/tejaas
Tejaas - a tool for discovering trans-eQTLs
szcf-weiya/MTWAS
R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
naim-panjwani/LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
BrunildaBalliu/FastGxC
Computationally efficient and statistically powerful software for detecting context-specific eQTL effects in multi-context genomic studies.
Genome3d/psychiatric_and_cognitive_multimorbidities
Analysis of regulatory impacts of GWAS SNPs associated with psychiatric disorders and cognitive functioning.
Genome3d/genetic_regulation_in_ASD
Analysis of regulatory impacts of autism-associated SNPs on biological pathways in the fetal and adult cortex.
swvanderlaan/QTLToolKit
A workflow based on QTLtools to run cis- and trans-QTL analyses.
dvav/eQTLseq
Hierarchical probabilistic models for multiple gene/variant associations based on NGS data
XUKEREN/phd-pipeline
Some workflows I wrote for my phd projects
Genome3d/alcohol-dependence
Analysis of tissue-specific regulatory impacts of alcohol dependence-associated SNPs.
RajLabMSSM/QTL-mapping-pipeline
A snakemake pipeline for QTL mapping. Based on the GTEX pipeline
senresearch/LiteQTL.jl
A lightweight Julia package for eQTL genome scans near real-time.
reagan0323/MT-eQTL
Multi-Tissue eQTL
rmgpanw/gtexr
An R interface to the GTEx Portal API
shengyongniu/eQTL
Whole bone eQTL and GWAS enrichment analysis
swvanderlaan/fastQTLToolKit
fastQTL analysis of methylation and expression data
antoniogomez/UVIC_TFM_AGomez_2023
Scripts of Final Master Project
Genome3d/ADH_and_ALDH_regulatory_networks
Association analysis of ADH and ALDH gene regulatory interactions with GWAS traits.
JunWangmath/GeP-HMRF
Hidden Markov Random Field Model - Inferring Gene-Disease Association by an Integrative Analysis of eQTL GWAS and Protein-Protein Interaction data
NCBI-Hackathons/chromatinonlinedatabase
An Online Database of 3D Chromatin Structure
Genome3d/genetic_regulation_in_COPD
De novo discovery of traits co-occurring with chronic obstructive pulmonary disease.
junkha/ba_biomed
Bachelor thesis of Hanna Junk
PrusWielki/Computational-Genomics
Projects realized during Computational Genomics course.