gene-ontology
There are 85 repositories under gene-ontology topic.
tanghaibao/goatools
Python library to handle Gene Ontology (GO) terms
flatironinstitute/DeepFRI
Deep functional residue identification
geneontology/go-ontology
Source ontology files for the Gene Ontology
biolink/biolink-model
Schema and generated objects for biolink data model and upper ontology
zjunlp/OntoProtein
[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
biolink/ontobio
python library for working with ontologies and ontology associations
bio4j/bio4j
Bio4j abstract model and general entry point to the project
jdrudolph/goenrich
GO enrichment with python -- pandas meets networkx
bio-ontology-research-group/deepgo
Function prediction using a deep ontology-aware classifier
YuLab-SMU/biomedical-knowledge-mining-book
:books: Biomedical knowledge mining using GOSemSim and clusterProfiler
geneontology/obographs
Basic and Advanced OBO Graphs: specification and reference implementation
YuLab-SMU/GOSemSim
:golf: GO-terms Semantic Similarity Measures
geneontology/protege-tutorial
Material for GO OWL/Protege Tutorial
geneontology/go-site
A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
sk-sahu/sig-bio-shiny
A standalone interactive application for detecting biological significance on a set of genes
enormandeau/go_enrichment
Transcripts annotation and GO enrichment Fisher tests
Bohdan-Khomtchouk/Microscope
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
mojaie/pygosemsim
Gene ontology (GO) semantic similarity library for Python
decodebiology/geneSCF_inactive
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
geneontology/helpdesk
The Gene Ontology Helpdesk
aedera/anc2vec
Unsupervised neural network for learning embeddings of GO terms.
kad-ecoli/python_scripts
scripts for parsing PDB, fasta, and GO
moshi4/FastDTLmapper
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
pgdurand/BlastViewer
This package contains the BLAST Viewer Tool.
Dill-PICL/GOMAP-singularity
GOMAP-Singularity is the containerized version of GOMAP
MaayanLab/Playbook-Workflow-Builder
A repository for the Playbook Workflow Builder project.
Chris1221/goldi
R Package for Gene Ontology Label Discernment and Identification.
dhimmel/gene-ontology
User-friendly Gene Ontology annotations
FlyBase/react-ontology-ribbon
A React component for generating a heatmap type display for GO slims.
TheJacksonLaboratory/isopretGO
Isoform function prediction and interpretation
aalto-ics-kepaco/GO-LTR-prediction
Protein function prediction through latent tensor reconstruction
AMSSwanglab/RE-GOA
A tool for non-coding genomic regions function enrichment analysis based on Regulatory Elements Gene Ontology Annotation (RE-GOA)
branchialspace/foldbender
protein graph representation
omics-datascience/BioAPI
A powerful abstraction of gene databases
NYXFLOWER/APRILE-Exp
This is the repository for reproducing results in "APRILE: Exploring the Molecular Mechanisms of Drug Side Effects with Explainable Graph Neural Networks".
sinc-lab/Comparison-of-Protein-learning
Comparison of protein learning