genomic
There are 28 repositories under genomic topic.
dellytools/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
ding-lab/hotspot3d
3D hotspot mutation proximity analysis tool
dputhier/pygtftk
A python package and a set of shell commands to handle GTF files
TheJacksonLaboratory/JAX-CNV
Official code repository for JAX-CNV
bcgsc/pori_graphkb_client
Front-end web client for the GraphKB project
cobilab/geco2
An improved compression tool for DNA sequences
danangcrysnanto/bovine-graphs-mapping
Comparison of sequencing read mapping to pangenome graphs
caravagn/evoverse.datasets
Datasets and analysis results released with the REVOLVER package for Cancer Evolution.
HolubievIllya/Bioconductor-for-Genomic-Data-Science
This repository contains the answers for coursera 's "Bioconductor for Genomic Data Science"
HolubievIllya/Command-Line-Tools-for-Genomic-Data-Science
This repository contains the answers for coursera 's "Command Line Tools for Genomic Data Science"
MR6996/spark-bwt
A tool for calculating the Burrows-Wheeler transform (BWT) in a Map-Reduce fashion on Apache Spark Framework.
FJBiocode/ShortSequenceRastreator
Short Sequence Rastreator allows genetic diversity analysis and preparation of input files for other softwares such as STRUCTURE, DARwin and SPAGeDi.
HighlanderLab/nlubanga_tea_breeding_gs
Simulation of tea breeding programmes using genomic selection
JianlinHe/sequencingData_track_R
The R code was developed to draw the genomic track of signals for next-generation sequencing data.
mutalyzer/crossmapper
HGVS numbering conversions
italo-granato/BGGE
Package to genomic prediction focused on GE genomic models
cumbof/TCGA2BED
The Cancer Genome Atlas Data Extraction and Conversion Tool
Jaduran12/OrthoConversion
We are taking existing orthoMcl Software Written Perl and Translating it to Python
jakyzhu/MACAU2
An R package designed for generalized linear mixed model inference in genomic sequencing studies
MikeACG/sequenceDistance
Fast "GenomicRanges" style distance calculation
mtsz-thiago/AnGRA
Biblioteca para análise de genômica de resistência a antibióiticos.
tushardave26/SimVar
Simulate Variants for provided genomic coordinates
AngelCampos/m.shortcuts
R package with sourced, original, and wrappers to functions I like and find recurrently useful.
romain-villa/diff-motif_project
Enrichment analysis of motifs with ancient and recent CNEs
yumatchlab/solidity-stringutils
Basic string utilities for Solidity