genomic

ding-lab/hotspot3d

3D hotspot mutation proximity analysis tool

dputhier/pygtftk

A python package and a set of shell commands to handle GTF files

TheJacksonLaboratory/JAX-CNV

Official code repository for JAX-CNV

bcgsc/pori_graphkb_client

Front-end web client for the GraphKB project

cobilab/geco2

An improved compression tool for DNA sequences

danangcrysnanto/bovine-graphs-mapping

Comparison of sequencing read mapping to pangenome graphs

HolubievIllya/Command-Line-Tools-for-Genomic-Data-Science

This repository contains the answers for coursera 's "Command Line Tools for Genomic Data Science"

caravagn/evoverse.datasets

Datasets and analysis results released with the REVOLVER package for Cancer Evolution.

HolubievIllya/Bioconductor-for-Genomic-Data-Science

This repository contains the answers for coursera 's "Bioconductor for Genomic Data Science"

kyegomez/Prometheus

Welcome to Prometheus, the revolutionary AI model that allows you to generate DNA sequences for any creature you can imagine. Whether it’s a pink panda, an elephant-sized turtle, or a completely new lifeform from your wildest dreams, Prometheus decodes the mystery of biology and synthesizes genetic blueprints with precision.

CSB5/driver_evaluation

MR6996/spark-bwt

A tool for calculating the Burrows-Wheeler transform (BWT) in a Map-Reduce fashion on Apache Spark Framework.

FJBiocode/ShortSequenceRastreator

Short Sequence Rastreator allows genetic diversity analysis and preparation of input files for other softwares such as STRUCTURE, DARwin and SPAGeDi.

HighlanderLab/nlubanga_tea_breeding_gs

Simulation of tea breeding programmes using genomic selection

JianlinHe/sequencingData_track_R

The R code was developed to draw the genomic track of signals for next-generation sequencing data.

mutalyzer/crossmapper

HGVS numbering conversions

aryanGupta-09/AMROrbit

An antimicrobial resistance (AMR) dashboard.

cumbof/TCGA2BED

The Cancer Genome Atlas Data Extraction and Conversion Tool

italo-granato/BGGE

Package to genomic prediction focused on GE genomic models

AngelCampos/m.shortcuts

R package with sourced, original, and wrappers to functions I like and find recurrently useful.

Jaduran12/OrthoConversion

We are taking existing orthoMcl Software Written Perl and Translating it to Python

jakyzhu/MACAU2

An R package designed for generalized linear mixed model inference in genomic sequencing studies

MikeACG/sequenceDistance

Fast "GenomicRanges" style distance calculation

mtsz-thiago/AnGRA

Biblioteca para análise de genômica de resistência a antibióiticos.

romain-villa/diff-motif_project

Enrichment analysis of motifs with ancient and recent CNEs

tushardave26/SimVar

Simulate Variants for provided genomic coordinates

Vincent-Therrien/stelaro

Metagenomic toolbox / Outils de métagénomique

MacFarlaneLab/Somatic-Mutation-Spectra-Analysis

smthorat/Python_Bioinformatics

This repository serves as a hub for various bioinformatics projects developed using Python. It includes Gene-Assembly, Gene-Classifier, BioResearchChat

yumatchlab/solidity-stringutils

Basic string utilities for Solidity