hla
There are 80 repositories under hla topic.
slowkow/awesome-vdj
📚 Tools and databases for analyzing HLA and VDJ genes.
ANHIG/IMGTHLA
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
MannLabs/alphapeptdeep
Deep learning framework for proteomics
nf-core/hlatyping
Precision HLA typing from next-generation sequencing data
onox/OpenRTI
Mirror of OpenRTI on SourceForge. Do not create PR's. Instead send patches or git pull commands to the mailing list on SF.
etopzone/CERTI
CERTI is an Open Source HLA RTI. HLA (High-Level Architecture) is a general purpose architecture for distributed computer simulation systems. In HLA systems, the RTI (RunTime Infrastructure) manages data exchange between simulations. CERTI supports HLA 1.3 specifications (C++ and Java) and partial IEEE 1516-v2000 and IEEE 1516-v2010 (C++) . CERTI is open source software (GPL, libraries are LGPL).
rivas-lab/covid19
As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
Kingsford-Group/kourami
Kourami: Graph-guided assembly for HLA alleles
GfellerLab/MixMHC2pred
HLA-II ligand predictor.
jason-weirather/hla-polysolver
Fork of the Polysolver project
zhengxwen/HIBAG
R package – HLA Genotype Imputation with Attribute Bagging (development version only)
WansonChoi/HATK
A collection of modules to process and analyze IMGT-HLA sequences.
PacificBiosciences/hifihla
An HLA star-calling tool for PacBio HiFi data types
Androthi/HIDE
IDE for the HLA language, written in HLA. Self compiles using HIDE
slowkow/allelefrequencies
📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.
ikmb/amino_acid_encoding_deep_learning_applications
The repository contains all the code for the paper amino acid encoding using deep learning application
immunogenomics/scHLApers
Code to run the scHLApers pipeline for personalized single-cell HLA quantification
nmdp-bioinformatics/py-ard
HLA ARD Reduction in Python
BGI-flexlab/SOAPTyping
HLA typing for Sanger Based Test
IVCTool/IVCT_Framework
For IVCT Framework Developers. Core System for the IVCT (Integration, Verification and Certification Tool) for HLA Federates
slowkow/hlabud
🐶 hlabud: HLA genotype analysis in R
solidi/hl-mods
Modifications for Half-Life on GoldSrc. Includes active development of Cold Ice Remastered.
MannLabs/PeptDeep-HLA
DL model to predict HLA peptide presentation
otopcu/Racon
RACoN - RTI abstraction component for MS.NET (RACoN)
Genentech/midasHLA
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.
GfellerLab/MoDec
Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
jfnavarro/hla_pipeline
DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
sethsh7/hla-prs-toolkit
Toolkit to aid generation of advanced Polygenic Risk Scores (PRS) including SNP-allele tagging and interaction models, especially in HLA. Developed and maintained by Seth Sharp (S.sharp@exeter.ac.uk).
linnil1/HLA_collections
A script to run HLA typing tools from next generation sequencing data
milochen0418/ieee-1516-rti
By IEEE 1516 Standard, To design and lmplement one distributed system for simulator purpose.
distributedsimulationtools/coreDSUnreal_Sample_FirstPersonShooterDemo
This is a Sample project to be used with coreDS Unreal and the Unreal Engine 4.
hlacontainers/about
About the HLA containers project
nmdp-bioinformatics/act-service
Allele Calling Tool (ACT)
nmdp-bioinformatics/seq-ann
Python package for doing fast and accurate sequence annotation
ikmb/iptoolkit
A pythonic library for analysing immunopeptidomic experiments
ramonamerong/hladownload
A tool for downloading HLA alleles, epitopes and frequencies