zhengxwen/HIBAG

Issues

• Association testing across all HLA type simultaneously

  #33 opened 2 months ago by oalavijeh
  0

• hlaConvSequence function: No matching: 02:02

  #31 opened 2 months ago by arsangjang
  0

• Difference between h.pval and others

  #32 opened 2 months ago by oalavijeh
  1

• hg38 hapmap data

  #29 opened a year ago by s220224
  2

• [Installation Error for HIBAG.gpu] Cannot find/define the path for opencl.h

  #27 opened a year ago by YifangZhang
  1

• The numbers of SNPs are not consistent

  #26 opened a year ago by JingjingBai2021
  1

• glm does not work

  #25 opened a year ago by JingjingBai2021
  0

• missing SNPs

  #24 opened a year ago by JingjingBai2021
  0

• More than 50%of SNPs are missing

  #22 opened a year ago by seagullOnABrick
  2

• association test

  #19 opened a year ago by SunYidan2021
  3

• VCF files

  #21 opened a year ago by karpat90
  3

• HLA typing for SNP2HLA output

  #20 opened 2 years ago by xiw588
  1

• Question: Genotype QC for training

  #14 opened 2 years ago by adiamb
  1

• Issue with hlaAttrBagClass

  #18 opened 2 years ago by staedlern
  10

• hlaAssocTest()

  #16 opened 3 years ago by mukhtarsadykov
  1

• Error Installing HIBAG

  #15 opened 3 years ago by pbleic
  4

• Imputed genotypes to train HIBAG Models?

  #12 opened 4 years ago by adiamb
  1

• Training in parallel causes error for loci "other" than HLA

  #13 opened 4 years ago by shubhamsaini
  2

• HLA prediction quality

  #11 opened 4 years ago by rcanovas
  1

• "there are 0 individuals in common" and "IDs in PLINK bed are not unique!"

  #10 opened 5 years ago by sidtjn
  1

• Error loading sample pre-built models

  #9 opened 5 years ago by rwanwork
  2

• Installation failed: Not Found (404) with install_github("zhengxwen/HIBAG.gpu")

  #5 opened 6 years ago by longbao738
  3

• Possible Incorrect Accuracy Estimates from HIBAG - Please help !

  #8 opened 5 years ago by Santy-8128
  2

• Force monomorphic SNPs in model?

  #7 opened 5 years ago by cbrunoels
  1

• Old aa alignment files

  #6 opened 6 years ago by mcjmigdal
  0

• Amino Acid test with continuous outcome

  #4 opened 6 years ago by wusixer
  2

• Invalid prefix in the PLINK BED file error message

  #3 opened 6 years ago by MarthaDuke
  3